View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13235_low_6 (Length: 509)
Name: NF13235_low_6
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_6 |
 | |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 1600623 - 1600139
Alignment:
| Q |
19 |
ttgtatgggaacatcaaccatcaatcagattcaaacgccaataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaata |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1600623 |
ttgtatgggaacatcgaccatcaatcagattcaaacgccaataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaata |
1600524 |
T |
|
| Q |
119 |
ttgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1600523 |
ttgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgc |
1600424 |
T |
|
| Q |
219 |
atcgatatttcacaggttcataatagattaaacaattgtaatcatataacaatatggcagcaccttcttcaaagtgttttatcggccataaacccgaacg |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1600423 |
atcgatatttcgcaggttcataatagattaaacaattgtaatcatataacaatatggcagcaccttcttcaaagtgttgtatcggccataaacccgaaca |
1600324 |
T |
|
| Q |
319 |
ccatgaaaaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1600323 |
ccatgaaaaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaa |
1600224 |
T |
|
| Q |
419 |
aaggtccagtcacaaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacgagttccattatgatgatgtcca |
505 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
1600223 |
aaggt--agtcacaaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacaagttccattattatgatttcca |
1600139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 62 - 463
Target Start/End: Complemental strand, 9075020 - 9074604
Alignment:
| Q |
62 |
aaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaa |
161 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9075020 |
aaaataaagtattagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaa |
9074921 |
T |
|
| Q |
162 |
tatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaattgt---a |
258 |
Q |
| |
|
|||| ||||||| ||||||| | | |||| |||||||||||||| |||| ||||| ||| ||||||| |||||||||| |||| |||||||||| | |
|
|
| T |
9074920 |
tatgtgggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagca |
9074821 |
T |
|
| Q |
259 |
atcatataacaatatggcagcaccttcttcaaagtgttttatcggccataaacccgaacgccatgaaa------------aaggattgaatgaagtatcg |
346 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||| |||||||| |
|
|
| T |
9074820 |
atgatataacaatatggcagcaccttcttcaaagtgttttatcggccataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatca |
9074721 |
T |
|
| Q |
347 |
tacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatc |
446 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9074720 |
atgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatc |
9074621 |
T |
|
| Q |
447 |
cctttaattctcccatg |
463 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9074620 |
cctttaattctcccatg |
9074604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 42 - 505
Target Start/End: Original strand, 8535287 - 8535768
Alignment:
| Q |
42 |
atcagattcaaacgccaataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatcctt |
141 |
Q |
| |
|
||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
8535287 |
atcagattcaattgcaaataaaaataaaatcttagaagctacattcttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatcctt |
8535386 |
T |
|
| Q |
142 |
caatgaaattagacttggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataa |
241 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||| ||| ||||| |||||| | |||| |||| ||| | ||| ||||||| |||||||||| |
|
|
| T |
8535387 |
caatgaaattagacttggaatgtgtgggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatag |
8535486 |
T |
|
| Q |
242 |
tagattaaacaatt---gtaatcatataacaatatggcagcaccttcttcaaagtgttttatcggcca---taaacccgaacgccatgaaa--------- |
326 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| | | || || || |
|
|
| T |
8535487 |
tagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgacttt |
8535586 |
T |
|
| Q |
327 |
---aaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggt |
423 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
8535587 |
ccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaaggt |
8535686 |
T |
|
| Q |
424 |
ccagtcacaaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacgagttccattatgatgatgtcca |
505 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||| ||| || |||| | || |||||||| ||||| |||| |
|
|
| T |
8535687 |
cgaatcacaaatgtaaagaaatccctttaattctcccatgctaatatgtctattactaagaaatccattattatgatttcca |
8535768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 88 - 467
Target Start/End: Original strand, 8528778 - 8529172
Alignment:
| Q |
88 |
ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct |
187 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| | |
|
|
| T |
8528778 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
8528877 |
T |
|
| Q |
188 |
gaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt |
284 |
Q |
| |
|
||||||||||||||| |||| ||||| | | |||||| ||||||| || ||| | |||||||| | ||| |||| |||||||||||||||||| |
|
|
| T |
8528878 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
8528977 |
T |
|
| Q |
285 |
cttcaaagtgttttatcggcca---taaacccgaacgccatgaa---------aaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattc |
372 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| || || | ||||||||||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
8528978 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattc |
8529077 |
T |
|
| Q |
373 |
ttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccctttaattctcccatgctaa |
467 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8529078 |
tccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaa |
8529172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 78 - 306
Target Start/End: Original strand, 8677627 - 8677858
Alignment:
| Q |
78 |
agctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||| || |||||||| |
|
|
| T |
8677627 |
agctacattcttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttc |
8677726 |
T |
|
| Q |
178 |
aaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaatt---gtaatcatataacaatatg |
274 |
Q |
| |
|
|| | | || ||| | | || |||||| |||| ||||| | | || |||| | |||||||| ||||| | |||||| | ||| ||||||||||||| |
|
|
| T |
8677727 |
aacaaattcggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatg |
8677826 |
T |
|
| Q |
275 |
gcagcaccttcttcaaagtgttttatcggcca |
306 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |
|
|
| T |
8677827 |
gcagcaccctcttcaaagtgttttaccggcca |
8677858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 57 - 464
Target Start/End: Original strand, 8636668 - 8637093
Alignment:
| Q |
57 |
caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagact |
156 |
Q |
| |
|
|||| |||||||||| || ||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
8636668 |
caatcaaaataaaatgttagaatctacattctaaccttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagact |
8636767 |
T |
|
| Q |
157 |
tggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaatt- |
255 |
Q |
| |
|
||||| ||| || |||||||||| | | || ||| | | || |||||| |||| ||||| | | | |||| | |||||||| ||||| | |||||| |
|
|
| T |
8636768 |
tggaacatgtggaattatttcaacaaactcggaagaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattg |
8636867 |
T |
|
| Q |
256 |
--gtaatcatataacaatatggcagcaccttcttcaaagtgttttatcggc---cataaacccgaacgccatgaa------------aaaggattgaatg |
338 |
Q |
| |
|
| ||| |||||||||||||||||| || |||||||||||||||| |||| |||| ||| ||||| ||| |||||| ||| |
|
|
| T |
8636868 |
caggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgacca |
8636967 |
T |
|
| Q |
339 |
aagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca-gataaaaaggtccagtcacaaatgt |
437 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| | |||||| | | |||||||| | |
|
|
| T |
8636968 |
aagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacggaaaaaagatgta-tcacaaatat |
8637066 |
T |
|
| Q |
438 |
aaagaaatccctttaattctcccatgc |
464 |
Q |
| |
|
|||| |||||| |||||||||| |||| |
|
|
| T |
8637067 |
aaagtaatccccttaattctccaatgc |
8637093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 57 - 306
Target Start/End: Original strand, 8644013 - 8644265
Alignment:
| Q |
57 |
caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagact |
156 |
Q |
| |
|
|||| |||||||||| || | ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
8644013 |
caatcaaaataaaatcttagcagctacattcttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagact |
8644112 |
T |
|
| Q |
157 |
tggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaattg |
256 |
Q |
| |
|
||||| ||| || |||||||||| | | || ||| | | || |||||| |||| ||||| | || |||| |||||||| ||||| | ||||||| |
|
|
| T |
8644113 |
tggaacatgtggaattatttcaacaaattcggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattg |
8644212 |
T |
|
| Q |
257 |
ta---atcatataacaatatggcagcaccttcttcaaagtgttttatcggcca |
306 |
Q |
| |
|
| || |||||||||||||||||| || |||||||||| ||||| |||||| |
|
|
| T |
8644213 |
caggaatgatataacaatatggcagccccctcttcaaagttttttaccggcca |
8644265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 84 - 467
Target Start/End: Complemental strand, 8548369 - 8547986
Alignment:
| Q |
84 |
attcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaaca |
183 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| | |||| |||||| | |
|
|
| T |
8548369 |
attcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatga |
8548270 |
T |
|
| Q |
184 |
atctgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaat----tgtaatcatataacaatatggcagc |
279 |
Q |
| |
|
| |||| | ||||||||| |||| ||||| || |||||| | || | ||| || | ||||||| || ||| ||||||||||| |||||| |
|
|
| T |
8548269 |
ttgtgaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatg-aatgatataacaatacggcagc |
8548171 |
T |
|
| Q |
280 |
accttcttcaaagtgttttatcggc---cataaacccgaacgccatgaaaaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttca |
376 |
Q |
| |
|
||| |||||||||||||||| |||| || ||| | ||||| | | |||||||| ||||||| | ||||| |||||||||||| ||| |
|
|
| T |
8548170 |
accctcttcaaagtgttttaccggcaaacacaaagcatgacgccgcggagaaggattggtcaaagtatcaatgtggtaaatcttagtccatgactct--- |
8548074 |
T |
|
| Q |
377 |
atgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccctttaattctcccatgctaa |
467 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||| | | || |||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
8548073 |
---ccatattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgtaaagacatccctttaattctcccaagctaa |
8547986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 350 - 494
Target Start/End: Original strand, 8641483 - 8641633
Alignment:
| Q |
350 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccag------tcacaaatgtaaagaa |
443 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| ||||||||||||| || |||||| | ||||||||| || |||||||||||| ||| |
|
|
| T |
8641483 |
ttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaatgtaaggaa |
8641582 |
T |
|
| Q |
444 |
atccctttaattctcccatgctaacatggctgttaccacgagttccattat |
494 |
Q |
| |
|
|||||||||| ||||||||||||| | | ||||||||| || ||||||||| |
|
|
| T |
8641583 |
atccctttaactctcccatgctaataagcctgttaccatgaattccattat |
8641633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 8641180 - 8641339
Alignment:
| Q |
57 |
caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagact |
156 |
Q |
| |
|
||||| ||||||||| || ||||| |||||||| ||||||||| ||||| | ||| |||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
8641180 |
caatacaaataaaat-ttagaagcaacattcttgccttgagtgaatatttaacacttcaatatt----cctttcacgacatccttcaatgagattagact |
8641274 |
T |
|
| Q |
157 |
tggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatc |
221 |
Q |
| |
|
||||||||| || |||| ||||| | ||||||| | |||||||||||| ||| ||||||||| |
|
|
| T |
8641275 |
tggaatatgtggaattacttcaactctttctgaacaagtcccatgaattttgaaaactttgcatc |
8641339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 464
Target Start/End: Original strand, 8644324 - 8644438
Alignment:
| Q |
350 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca-gataaaaaggtccagtcacaaatgtaaagaaatccc |
448 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||| || || || | | || ||||||||||| |||||| |
|
|
| T |
8644324 |
ttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatcacgaaaagaatatgta-tcgcaaatgtaaagtaatccc |
8644422 |
T |
|
| Q |
449 |
tttaattctcccatgc |
464 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8644423 |
cttaattctcccatgc |
8644438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 8677926 - 8677988
Alignment:
| Q |
350 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatca |
412 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
8677926 |
ttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacatca |
8677988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 2905247 - 2905141
Alignment:
| Q |
62 |
aaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctc---aatattgtcccctttcaagacatccttcaatgaaattagacttg |
158 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||| ||||||||||| || |||||| || |||| |||||| |||||||| |||||||||| |
|
|
| T |
2905247 |
aaaataaaatattataagctacattactaccttgagtagatgttcagcacctcctcaacattgtctccattcacgacatctttcaatgatattagacttg |
2905148 |
T |
|
| Q |
159 |
gaatatg |
165 |
Q |
| |
|
||||||| |
|
|
| T |
2905147 |
gaatatg |
2905141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 2904992 - 2904938
Alignment:
| Q |
350 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattg |
404 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
2904992 |
ttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
2904938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 2856884 - 2856824
Alignment:
| Q |
350 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacat |
410 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2856884 |
ttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat |
2856824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 2874494 - 2874434
Alignment:
| Q |
350 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacat |
410 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2874494 |
ttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat |
2874434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 2845056 - 2844997
Alignment:
| Q |
351 |
tgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacat |
410 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2845056 |
tgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat |
2844997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 2845305 - 2845222
Alignment:
| Q |
81 |
tacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatat |
164 |
Q |
| |
|
||||||| |||| ||||||| | |||| | | |||| |||||| ||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
2845305 |
tacattcgtaccatgagtgggtgttcaacgcttcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatat |
2845222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 2857126 - 2857043
Alignment:
| Q |
81 |
tacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatat |
164 |
Q |
| |
|
||||||| |||| ||||||| | |||| | | |||| |||||| ||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
2857126 |
tacattcgtaccatgagtgggtgttcaacgcttcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatat |
2857043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 463
Target Start/End: Original strand, 9003602 - 9003685
Alignment:
| Q |
380 |
ccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccctttaattctcccatg |
463 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||| | | | ||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9003602 |
ccatactccttcataacccaagttgcaacatcaaagagagaggatgagtcacaaatgtaaagaaatccccttaattctcccatg |
9003685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 9003273 - 9003393
Alignment:
| Q |
62 |
aaaataaaatatttgaagctacattcttacct---tgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttg |
158 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||| ||||| || ||||| |||||||| |||||| || || | | ||||||||||| |||||||||| |
|
|
| T |
9003273 |
aaaatcaaatattagaagctacatccttacctccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttg |
9003372 |
T |
|
| Q |
159 |
gaatatgcgggattatttcaa |
179 |
Q |
| |
|
||||||| || |||| ||||| |
|
|
| T |
9003373 |
gaatatgtggaattacttcaa |
9003393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Complemental strand, 2904914 - 2904881
Alignment:
| Q |
428 |
tcacaaatgtaaagaaatccctttaattctccca |
461 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
2904914 |
tcacaaatgtaaagaaatcccttcaattctccca |
2904881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 48362195 - 48361691
Alignment:
| Q |
19 |
ttgtatgggaacatcaaccatcaatcagattcaaacgccaataaaaataaaatattt--gaagctacattcttaccttgagtggatattcagcacctcaa |
116 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
48362195 |
ttgtatgagaacatcaaccatca----gattcaattgccaataaaaataaagtattatggaagctacattcttaccttgagtggacattcaacacctcca |
48362100 |
T |
|
| Q |
117 |
tattgtcccctttcaagacatccttcaatgaaatta-----gacttggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaa |
211 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| || ||||||||||||| ||||| | |||| |
|
|
| T |
48362099 |
tattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaagaacctgaacgactcccgtgaatatgaaaa |
48362000 |
T |
|
| Q |
212 |
gctttgcatcgatatttcacaggttcataatagattaaacaattgt---aatcatataacaatatggcagcaccttcttcaaagtgttttatcggccata |
308 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48361999 |
gctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagcaccttcttcaaagtgttttatcggccata |
48361900 |
T |
|
| Q |
309 |
aacccgaacgccatgaa------------aaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataac |
396 |
Q |
| |
|
|| | ||| |||| ||| |||||||||| | ||||| | ||||||||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
48361899 |
aagctgaatgccaagaagcaaaactgctcgaaggattgaacgcagtattgatgttgtaaaccttagtctatgattcttcaataccatattcattcataac |
48361800 |
T |
|
| Q |
397 |
ccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccctttaattctcccatgctaacatggctgttaccacgagttccattatga |
496 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||| | |
|
|
| T |
48361799 |
ccacattgaaacatcagatgcaaaggtcgagtcacaaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattatta |
48361700 |
T |
|
| Q |
497 |
tgatgtcca |
505 |
Q |
| |
|
|||| |||| |
|
|
| T |
48361699 |
tgatttcca |
48361691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 350 - 467
Target Start/End: Original strand, 35779940 - 35780057
Alignment:
| Q |
350 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccct |
449 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
35779940 |
ttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaaaattcaagtcacaaatgtaaagaaatccct |
35780039 |
T |
|
| Q |
450 |
ttaattctcccatgctaa |
467 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35780040 |
ttaattctcccatgctaa |
35780057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 277
Target Start/End: Original strand, 35779640 - 35779861
Alignment:
| Q |
59 |
ataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttg |
158 |
Q |
| |
|
|||||| |||| |||| ||| ||| |||||||||||| || || | | ||| ||||||||||| ||||| | |||||||||||||| |||||||||| |
|
|
| T |
35779640 |
ataaaattaaagtattagaaactatgttcttaccttgaatgaatgctgaacacttcaatattgtctccttttacaacatccttcaatgatattagacttg |
35779739 |
T |
|
| Q |
159 |
gaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaattg-- |
256 |
Q |
| |
|
||||||| || |||| ||||| | | | ||||||| ||||| ||||| |||| ||||| ||| ||||||| |||||||| | ||||| ||||||||| |
|
|
| T |
35779740 |
gaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaactttgtatccatatttctcaggttcaaagtagataaaacaattgca |
35779839 |
T |
|
| Q |
257 |
-taatcatataacaatatggca |
277 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
35779840 |
tgaatgatataacaatatggca |
35779861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 88 - 467
Target Start/End: Original strand, 9442939 - 9443333
Alignment:
| Q |
88 |
ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct |
187 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || |||||| ||||||| ||| | |
|
|
| T |
9442939 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataattt |
9443038 |
T |
|
| Q |
188 |
gaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt |
284 |
Q |
| |
|
||||||||||||||| |||| ||||| | | |||||| ||||||| || ||| | |||||||| | ||| |||| |||||||||||||||||| |
|
|
| T |
9443039 |
ttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcacctt |
9443138 |
T |
|
| Q |
285 |
cttcaaagtgttttatcggcca---taaacccgaacgccatgaa---------aaaggattgaatgaagtatcgtacttgtaaaccttagtccatgattc |
372 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| || || | ||||||||||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
9443139 |
cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattc |
9443238 |
T |
|
| Q |
373 |
ttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatccctttaattctcccatgctaa |
467 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9443239 |
tccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccctttaattctcccatgctaa |
9443333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 4488 - 4585
Alignment:
| Q |
84 |
attcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaa |
181 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| || |||| ||||||| |
|
|
| T |
4488 |
attcttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaa |
4585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 4761 - 4876
Alignment:
| Q |
352 |
gtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatcccttt |
451 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||| || | |||||||||||||||||||||||||| |
|
|
| T |
4761 |
gtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttgagtcacaaatgtaaagaaatcccttt |
4860 |
T |
|
| Q |
452 |
aattctcccatgctaa |
467 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4861 |
aattctcccatgctaa |
4876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 16716460 - 16716575
Alignment:
| Q |
352 |
gtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtccagtcacaaatgtaaagaaatcccttt |
451 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| || ||| | ||||| ||||||| |||||||||||| |
|
|
| T |
16716460 |
gtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgtatagaaatcccttt |
16716559 |
T |
|
| Q |
452 |
aattctcccatgctaa |
467 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16716560 |
aattctcccatgctaa |
16716575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 16716175 - 16716256
Alignment:
| Q |
84 |
attcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatg |
165 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || ||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
16716175 |
attcttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatg |
16716256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 87 - 311
Target Start/End: Original strand, 5130637 - 5130865
Alignment:
| Q |
87 |
cttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatc |
186 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||| | |||||| | |||||||||||||| |||||| || |||| ||||| | |
|
|
| T |
5130637 |
cttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatcttttt |
5130736 |
T |
|
| Q |
187 |
tgaacgactcccatgaatttcaaaagctttgcatcgatatttcacaggttcataat-agattaaacaatt---gtaatcatataacaatatggcagcacc |
282 |
Q |
| |
|
||||| | ||||||||||| |||| ||||| ||| ||||||| | ||||||| | ||| ||||| || | ||| ||||| ||||||||||||||| |
|
|
| T |
5130737 |
tgaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcacc |
5130836 |
T |
|
| Q |
283 |
ttcttcaaagtgttttatcggccataaac |
311 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
|
|
| T |
5130837 |
ctcttcaaagtgttttaccggccaaaaac |
5130865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 26324287 - 26324195
Alignment:
| Q |
327 |
aaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaa |
419 |
Q |
| |
|
|||||||||| |||| |||| ||||||| |||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
26324287 |
aaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagataaaa |
26324195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 464
Target Start/End: Original strand, 5130964 - 5130996
Alignment:
| Q |
432 |
aaatgtaaagaaatccctttaattctcccatgc |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5130964 |
aaatgtaaagaaatccctttaattctcccatgc |
5130996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University