View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_low_7 (Length: 386)
Name: NF13235_low_7
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 113 - 381
Target Start/End: Complemental strand, 26823966 - 26823694
Alignment:
| Q |
113 |
ctggctcttagtttttgtttgtgttgagatcagagtcttgtttattctgttaggtaataaatatatgtgtgagaataatgggaggaatcgtttaaacttt |
212 |
Q |
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| T |
26823966 |
ctggctcttagtttttgtttgtgttgagatcagagtcttgtttgttctgttaggtaataaatatatgtgtgagaataatgggaggaatcgtttaaacttt |
26823867 |
T |
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| Q |
213 |
cttatataataatttgatgataatttgattgattttaaacata----tataaaagtaaatgatatatctaagaacaaagaaagtatcatgaaggttcann |
308 |
Q |
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| T |
26823866 |
cttatataataatttgatgataatttgattgattttaaacatatatatataaaagtaaatgatatatctaggaacaaagaaagtatcatgaaggttcatg |
26823767 |
T |
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| Q |
309 |
nnnnnngtacgtttataggatttaatgttaacgcgtaggattgtgataacgatggtgattaagaataatctac |
381 |
Q |
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| T |
26823766 |
ttttttgtacgtttataggatttaatgttaacgcgtaggattgtgataacgatggtgattaagaataatctac |
26823694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26824140 - 26824065
Alignment:
| Q |
1 |
gtgataggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatgacgaggttggtga |
76 |
Q |
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| T |
26824140 |
gtgataggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatgacgaggttggtga |
26824065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 26835969 - 26835862
Alignment:
| Q |
120 |
ttagtttttgtttgtgttgagatcagagtcttgtttattctgttaggtaataaatatatgtgtgagaataatgggaggaatcgtttaaactttcttatat |
219 |
Q |
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| T |
26835969 |
ttagtttttgtttgtgatgagatcagaatcttgtttgttctgttaggcaa---atatatgtgtgagaataatgagagggatcgtttaaactttcttatat |
26835873 |
T |
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| Q |
220 |
aataatttgat |
230 |
Q |
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| T |
26835872 |
aataatttgat |
26835862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 26805215 - 26805141
Alignment:
| Q |
191 |
tgggaggaatcgtttaaactttcttatataataatttgatgataatttgattgattttaaacatatataaaagta |
265 |
Q |
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| T |
26805215 |
tgggagggatcgtttaaactttcttatataacaacttgatgatgatttgattgattttaaacataaataagagta |
26805141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26836084 - 26836027
Alignment:
| Q |
7 |
ggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatga |
64 |
Q |
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| T |
26836084 |
ggtgcagaggaagaaggttgtggttgataaggataagccatgatgatagtaacgatga |
26836027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 26805381 - 26805334
Alignment:
| Q |
7 |
ggtgcagaggcagaaggttgtggttgataaggataagccatgatgata |
54 |
Q |
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| T |
26805381 |
ggtgcagaggcagatggttgtggttgataaggataagccatgatgata |
26805334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 26824206 - 26824166
Alignment:
| Q |
7 |
ggtgcagaggcagaaggttgtggttgataaggataagccat |
47 |
Q |
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| T |
26824206 |
ggtgcagaggcagatggttgtggttgacaaggataagccat |
26824166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26795488 - 26795431
Alignment:
| Q |
7 |
ggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatga |
64 |
Q |
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| T |
26795488 |
ggtgcagaggcagatggctgtgctggataaggataagccatgttgacaatgatgatga |
26795431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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