View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13236_high_6 (Length: 446)
Name: NF13236_high_6
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 8653168 - 8653590
Alignment:
| Q |
18 |
cttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaataaggtaaaaattgaaaattggtgaattttgg |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8653168 |
cttacaatatttccttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaataaggtaaaaattgaaaatgggtgaattttgg |
8653267 |
T |
|
| Q |
118 |
attcggatcgacagtatcgttctctaccgcaatacctaccgcaaatatctcactgtttgattaacttaatggctgggatgttaaatgtaattatggaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653268 |
attcggatcgacagtatcgttctctaccgcaatacctaccgcaaatatctcactgtttgattaacttaatggctgggatgttaaatgtaattatggaatc |
8653367 |
T |
|
| Q |
218 |
aaaaaacacttcannnnnnngggagcaaggattaata----------------aacccaatctaccacaaacttgatgggttgggttatttcaannnnnn |
301 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
8653368 |
aaaaaacacttcatttttttgggagcaaggattaataaaccccacttgcaacgaacccaatctaccacaaacttgttgggttgggttatttcaatttttt |
8653467 |
T |
|
| Q |
302 |
nncttttcttctcaatttatagtttcaaaactttgatgagattactaccttcttcagccatttatgtttctgcagatttatgactgtaaattttttaatg |
401 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8653468 |
ttcttttcttctcaatttctagtttcataactttgatgagattactactttcttcagccatttatgtttctgcagatttatgactgtaaattttttaatg |
8653567 |
T |
|
| Q |
402 |
gggttgaagaagacagtgtgttt |
424 |
Q |
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|||||||||||||| |||||||| |
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| T |
8653568 |
gggttgaagaagaccgtgtgttt |
8653590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 38698645 - 38698490
Alignment:
| Q |
75 |
tgaacaaaaaataaggtaaaaattgaaaattggtgaattttggattcggatcgacagtatcgttctctaccgcaatacctaccgcaaatatctcactgtt |
174 |
Q |
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||||||||||| || ||||||||||||| |||||||||||||||||||||| || |||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
38698645 |
tgaacaaaaaaaaacaaaaaaattgaaaatgggtgaattttggattcggatcggcaatatcgttctctatcccaatgcctaccgcaaatatctcactgtt |
38698546 |
T |
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| Q |
175 |
tgattaacttaatggctgggatgttaaatgtaattatggaatcaaaaaacacttca |
230 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38698545 |
tgattaacttaatggctgggatattaaatgtaattatggaatcaaaaaacacttca |
38698490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 38698685 - 38698647
Alignment:
| Q |
48 |
caacttccacataccaattatgactcatgaacaaaaaat |
86 |
Q |
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| T |
38698685 |
caacttccacataccaattatgaatcatgaacaaaaaat |
38698647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 35758766 - 35758834
Alignment:
| Q |
18 |
cttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaat |
86 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| | | ||| |||||| |||||||| |||||| |
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| T |
35758766 |
cttacaatatttccttttacattaagaacacaacttcgaaagaccgcttatgaatcatgaactaaaaat |
35758834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41348617 - 41348549
Alignment:
| Q |
18 |
cttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaat |
86 |
Q |
| |
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|||||| ||||| ||||| |||||||||||||||||| | | | ||||||||| |||||||| |||||| |
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| T |
41348617 |
cttacagtatttccttttacattaagaacacaacttcaaaagatcaattatgaatcatgaactaaaaat |
41348549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 35107338 - 35107246
Alignment:
| Q |
304 |
cttttcttctcaatttatagtttcaaaactttgatgagattactacc-----ttcttcagccatttatgtttctgcagatttatgactgtaaa |
391 |
Q |
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|
|||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |
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| T |
35107338 |
cttttcttctcaatttctagtttcaatactttgataagattactaccgttgtttcttcagccatttatatttctgcagatatatgactgtaaa |
35107246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 35107483 - 35107406
Alignment:
| Q |
153 |
ctaccgcaaatatctcactg-tttgattaacttaatggctgggatgttaaatgtaattatggaatcaaaaaacacttc |
229 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||| ||| |||| |
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| T |
35107483 |
ctaccgcaaatatctcaccaatttgattaacttaatggctggaatattatatgtaattatggaatcaaagaacgcttc |
35107406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 29921089 - 29921156
Alignment:
| Q |
18 |
cttacaatattttcttttgcattaagaacacaacttccacataccaattatgactcatgaacaaaaaa |
85 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||| | | ||||||||||| |||||||| ||||| |
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| T |
29921089 |
cttacaatatttcctcttacattaagaacacaacttcaaaagaccaattatgaatcatgaactaaaaa |
29921156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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