View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13236_high_7 (Length: 385)
Name: NF13236_high_7
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 31454819 - 31454454
Alignment:
| Q |
1 |
ttacatatatttgtagtttaaaagtaaaacctattgggcccacctatgtctatcaaagacgtggctatctcatcataggataaaaatcaacatctaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31454819 |
ttacatatatttgtagtttaaaagtaaaacctattgggcccacctatgtctatcaaagacgtggctatctcatcataggataaaaatcaacatctaaagt |
31454720 |
T |
|
| Q |
101 |
acggtttgattatttgtttagaatgacaaaacactccaaaatgcatattatgaacatacacatnnnnnnntactttggataatctgaaattttattagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31454719 |
acggtttgattatttgtttagaatgacaaaacactccaaaatgcatattatgaacacacacacaaaaaaa-actttggataatctgaaattttattagat |
31454621 |
T |
|
| Q |
201 |
acatatctatctttcaattatttaatgttgtataaataattttgcctacatttgtatacaataaaacttcatgtaccaaagaatccaaacaagttagatg |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31454620 |
acatatctatcattcaattatttaatgttgtataaataattttgcctacattggtatacaataaaacttcatgtaccaaagaatccaaacaagttagatg |
31454521 |
T |
|
| Q |
301 |
aattaattaaagttcatgaaccaaattctggtagtgacatgaagacacttaacaaacacactcattt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31454520 |
aattaattaaagttcatgaaccaaattctggcagtgacatgaagacacttaacaaacacactcattt |
31454454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University