View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13236_low_1 (Length: 689)
Name: NF13236_low_1
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 6564519 - 6564040
Alignment:
| Q |
17 |
agtaaaaacatgcacaaagttatgctaactctgataaagtgaatctgcaaaacagtaaccaataattcacaaacaacagagaaaaagagaaactgagaaa |
116 |
Q |
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| T |
6564519 |
agtaaaaacatgcacaaagttatgctaactctgataaagtgaatctgcaaaacagtaaccaataattcacaaacaacagagaaaaagagaaactgagaaa |
6564420 |
T |
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| Q |
117 |
ggttttatacaattcatggagcgggaaaaagaagaaaaaatggtttttgttttatacaaataataaaataatatggaagaagaaggtgaaaacaaatgag |
216 |
Q |
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| T |
6564419 |
ggttttatacaattcatggagcgggaaaaagaagaaaaaatggtttttgttttatacaaataataaaaaaatatggaagaagatggtgaaaacaaatgag |
6564320 |
T |
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| Q |
217 |
aaggacgaggtttgtttaaggtgttacatatacgacctcatataatgactaatgaaagtgttacagttgttgcttgtgtaaagtaccaatatgggataat |
316 |
Q |
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| T |
6564319 |
aaggacgaggtttgtttaaggtgttacatatacgacctcatataatgactaatgaaagtgttacagttgttgcttgtgtaaagtaccaatatgggataat |
6564220 |
T |
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| Q |
317 |
gatgacaacaatgaaacaaattctgaactgagatgtttaatgatatttattactgtgttacatgcatattgctaacaattaaatgttgttgacagacata |
416 |
Q |
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| T |
6564219 |
gatgacaacaatgaaacaaattctgaactgagatgtttaatgatatttattactgtgttacatgcatattgctaacaattaaatgttgttgacagacata |
6564120 |
T |
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| Q |
417 |
gataaggacagaaaaattccttttcttagtgaaactgctactatgcgtaattaatgatacttcaaggatgggtgatgctt |
496 |
Q |
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| T |
6564119 |
gataaggacataaaaattccttttcttagtgaaactgctactatgcgtaattaatgatacttcaaggatgggtgatgctt |
6564040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 602 - 679
Target Start/End: Complemental strand, 6563937 - 6563860
Alignment:
| Q |
602 |
ttgctacaaattacattttttaaagttaataattgaggtatttaggattcgaacctcatcatctatatatagtataat |
679 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6563937 |
ttgctacaaattacattttttaaagttaataattaaggtatttaggattcgaacctcatcatctatatataatataat |
6563860 |
T |
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