View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13236_low_3 (Length: 542)
Name: NF13236_low_3
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 533
Target Start/End: Original strand, 40051491 - 40052017
Alignment:
| Q |
20 |
cattgtgaaacttgctcagtcatttggtggtctttgttcgagtcttaaattgcaatgtgaatgttgcattccctttagagggctgtgtggtaaatttaaa |
119 |
Q |
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| T |
40051491 |
cattgtgaaacttgctcagtgatttggtggtcttcgttcgagtcttaaattgcaatgtgaatgttgcatgccctttagagggctgtgtggtatatttaaa |
40051590 |
T |
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| Q |
120 |
aatctttatatgtcatatatttcttcaacgagaaactagtcatggttaatgttttcgtgtgattaacaaacaagtatcgaatttacttatataccaaacc |
219 |
Q |
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| T |
40051591 |
aatctttatatgtcatatatttcttcaacgagaaactagtcatggttaatgttttcgtgtgattaacaaacaagtatagaatttacttatataccaaacc |
40051690 |
T |
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| Q |
220 |
aaacatatatccatagattgatttatttatccacaataacaacattaaaaggaaa----------------gaaccttgagtaattaatcagagtgacag |
303 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
40051691 |
aaacatatatccattgattgatttatttatccacaataacaacattaaaaggaaataattttacaaaattagaaccttgagtaattaataagagtgacag |
40051790 |
T |
|
| Q |
304 |
tcgtcacacatgagatggatcaacaccaacagacttaagagtctcagcacgaggttgataagcaaaagcatctctgtgaatcggactagaaacttggtta |
403 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051791 |
tc---acacatgagatggatcaacaccaacagacttaagagtctcagcacgaggttgataagcaaaagcatctctgtgaatcggactagaaacttggtta |
40051887 |
T |
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| Q |
404 |
tgatcaggataactacgttcctgaacatgtgcaattttcctaaagaatgaactcttaaagaatctatcagattcctccataacatgatcgggttccacta |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051888 |
tgatcaggataactacgttcctgaacatgtgcaattttcctaaagaatgaactcttaaagaatctatcagattcctccataacatgatcgggttccacta |
40051987 |
T |
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| Q |
504 |
cttcaggaacagtctctctcctttgcttct |
533 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
40051988 |
cttcaggaacagtctctctcctttgtttct |
40052017 |
T |
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