View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13236_low_4 (Length: 539)
Name: NF13236_low_4
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 30942335 - 30941819
Alignment:
| Q |
16 |
tcaaaattaaccattaccatagacaaaggaatattcaagaaaattgaatattactagagctggattcttcacttcccttgctttgacttgtgcttttctt |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942335 |
tcaaaattaaccattaccatagacaaaggaatattcaagaaaattgaatattactggagctggattcttcacttcccttgctttgacttgtgcttttctt |
30942236 |
T |
|
| Q |
116 |
tttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtatcagga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942235 |
tttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtatcagga |
30942136 |
T |
|
| Q |
216 |
gacccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggtt |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
30942135 |
gacccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaagtacaaggtgcaggtggtt |
30942036 |
T |
|
| Q |
316 |
ctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactg |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942035 |
ctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgcactg |
30941936 |
T |
|
| Q |
416 |
tgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941935 |
tgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaa |
30941836 |
T |
|
| Q |
516 |
atggttgttgatgatgt |
532 |
Q |
| |
|
||||||||||||||||| |
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| T |
30941835 |
atggttgttgatgatgt |
30941819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
449 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
493 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 103 - 505
Target Start/End: Complemental strand, 39556759 - 39556357
Alignment:
| Q |
103 |
ttgtgcttttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
202 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||| ||||| || || ||||| | ||| || || ||||| |
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|
| T |
39556759 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaagg |
39556660 |
T |
|
| Q |
203 |
attagtatcaggagacccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacac |
302 |
Q |
| |
|
|||||| || |||| || || ||||| ||||||||||||||||| || ||||| |||||||| | |||||||||||||||||||| ||||| ||||| |
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|
| T |
39556659 |
attagtctctggagttccgccgttttcctcataagcagcccttaacctcccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaa |
39556560 |
T |
|
| Q |
303 |
ggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggt |
402 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||||| |||||| || |||||||||||||| ||||| || | ||| || ||||| ||||||| |
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|
| T |
39556559 |
ggtgctggtggctctggctgtccataaaacatacaaccttgtaaatgaactttggtttttccaaattgatctaaatacctaagaaattccaacacatggt |
39556460 |
T |
|
| Q |
403 |
tgctattgcactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
502 |
Q |
| |
|
|| |||||| || ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
39556459 |
tggaattgcagtgagaaagtggaacgggtggtcttaggttgtttaagtattgaccaaaagtgttccaatctcttctcttttgagattcatagcggctaag |
39556360 |
T |
|
| Q |
503 |
tgt |
505 |
Q |
| |
|
||| |
|
|
| T |
39556359 |
tgt |
39556357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 111 - 502
Target Start/End: Original strand, 32002006 - 32002397
Alignment:
| Q |
111 |
ttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtat |
210 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||| ||||| | ||| | ||| |||| | |||||||||||||||||||||||||| | |
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|
| T |
32002006 |
ttctttttcttcttgtaaggaattcctctagccttagcttgagaatctctcacctcacgaagatagattcttatggaaccactagcaaaaggattagttt |
32002105 |
T |
|
| Q |
211 |
caggagacccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcagg |
310 |
Q |
| |
|
|||| | ||||||||||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||| | |||||||| ||||| ||| |||| |
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|
| T |
32002106 |
caggtaatccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccagg |
32002205 |
T |
|
| Q |
311 |
tggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattg |
410 |
Q |
| |
|
|||||| | |||||| |||||| ||||||||||| || || || |||||||||||||| || ||||| | ||||| || | ||||||||| ||| |
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|
| T |
32002206 |
tggttcggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatggtttgaatta |
32002305 |
T |
|
| Q |
411 |
cactgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
502 |
Q |
| |
|
|| | ||| |||| ||||||||||| || | |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
32002306 |
caatttgatagtgccactggtggtctttgattccttaagtattgtccaaaagtgttccaatctcttctcttttgtgactcgtatcgactaag |
32002397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 388
Target Start/End: Complemental strand, 4863290 - 4863129
Alignment:
| Q |
227 |
ttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtcca |
326 |
Q |
| |
|
||||||||||||||| |||| | ||| || || ||||| | || |||||||||||||| | ||||| ||||||||||| || || || |||||||| |
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|
| T |
4863290 |
ttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccg |
4863191 |
T |
|
| Q |
327 |
taaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaa |
388 |
Q |
| |
|
|||| || ||||| || | ||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
4863190 |
aaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaa |
4863129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 33672046 - 33672141
Alignment:
| Q |
218 |
cccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtgg |
313 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||| | ||||| | |||||||||||||||| |||||||| | ||| ||||||||||| |
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|
| T |
33672046 |
cccaccattttcttcaaaagcagctcttagtcttccaatcaatgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtgg |
33672141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 373
Target Start/End: Complemental strand, 15970455 - 15970300
Alignment:
| Q |
218 |
cccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaggtacacggtgcaggtggttct |
317 |
Q |
| |
|
||||||||| |||||| ||||||| || | ||| |||||||| ||||| | || ||||| ||||| | ||||||||| | ||| | ||||||||| | | |
|
|
| T |
15970455 |
cccaccattctcttcaaaagcagctctaagtctcccaataagtgcatcaagactaccccacgcttggcgaagaggacatggacatgatgcaggtggattt |
15970356 |
T |
|
| Q |
318 |
ggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtc |
373 |
Q |
| |
|
|| ||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
15970355 |
ggatgtccataaaagggacaaatcagagtatgaaccttagtttttccaaattggtc |
15970300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 433
Target Start/End: Complemental strand, 35814703 - 35814540
Alignment:
| Q |
270 |
cttccccaagcttgtctaagaggacaggtacacggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaatt |
369 |
Q |
| |
|
|||||||||||||| | |||||||| | ||| ||||||||||| ||||||||| | || || |||||||| | ||||||||||| || ||||||| |
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|
| T |
35814703 |
cttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaaccttagtcttaccaaatt |
35814604 |
T |
|
| Q |
370 |
ggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtgg |
433 |
Q |
| |
|
| || | ||||||||| ||||| | |||||||||| || || ||||| ||||||||| |||| |
|
|
| T |
35814603 |
gatcaaggtaacgaagaaaatcaagaacatggttgaagttacagtgtgatagtggaactagtgg |
35814540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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