View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13236_low_5 (Length: 538)
Name: NF13236_low_5
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 23 - 529
Target Start/End: Original strand, 40276971 - 40277477
Alignment:
| Q |
23 |
actcatacaagaggtagaaaaactcatacaagaggtgaagaatctgaaaatacaatctggagtaccatcatggaatgaataacgagaattgcnnnnnnnn |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40276971 |
actcatacaagaggtagaaaaactcatacaagaggtgaagaatctgaaaatacaatctggagtaccatcatggaatgaatatcgagaattgcaaaaaaaa |
40277070 |
T |
|
| Q |
123 |
ntaataagactgaatgagaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattatgtgttttaagtcta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40277071 |
ataataagactgaatgagaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaatggaaatattatgtgttttaagtcta |
40277170 |
T |
|
| Q |
223 |
gagaggagacttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40277171 |
gagaggagacttcagatcaacttttagaggcattcaaggatgatgattgttctatgattggcttgtatggtaagcagggatctggtaaaacagcattggt |
40277270 |
T |
|
| Q |
323 |
gaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
40277271 |
gaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaaacccaaatatcacagcaatgcaagatgaa |
40277370 |
T |
|
| Q |
423 |
attgctgactccttgaatataagatttgatgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttg |
522 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40277371 |
attgctgactccttgaatattagatttgatgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatacttgtgatctttg |
40277470 |
T |
|
| Q |
523 |
atgatgt |
529 |
Q |
| |
|
||||||| |
|
|
| T |
40277471 |
atgatgt |
40277477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 139 - 529
Target Start/End: Original strand, 40376229 - 40376631
Alignment:
| Q |
139 |
agaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattat---gtgttttaagtctagagaggagacttc |
235 |
Q |
| |
|
|||||||| | ||||| |||||||||| | ||||||||||||||| ||||| ||| |||||||| | | |||||| ||||| | |||| || |||| |
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|
| T |
40376229 |
agaaatgtaattttgatccattttcaattataattccaagtttagaacacttctctttaggaaataattttgagtgtttcaagtcgacagagaaggcttc |
40376328 |
T |
|
| Q |
236 |
agatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggt |
335 |
Q |
| |
|
|||| ||||||| || ||| || | |||||| ||||| ||| || || ||||| |||| || | ||||||||||| ||||||||| || ||||||| |
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|
| T |
40376329 |
agatgaacttttggaagcactgcaagatgataattgtcgtataataggattgtacggtaggcgtgactctggtaaaactacattggtgagagtaatgggt |
40376428 |
T |
|
| Q |
336 |
gagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactcct |
435 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40376429 |
gagaaagtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcct |
40376528 |
T |
|
| Q |
436 |
tgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatga |
526 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| ||||| ||||| |||||||||||||||| ||| || ||||||||||||||||| |
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|
| T |
40376529 |
tgaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaatatggatcatcctatacttgtgatctttgatga |
40376628 |
T |
|
| Q |
527 |
tgt |
529 |
Q |
| |
|
||| |
|
|
| T |
40376629 |
tgt |
40376631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 139 - 529
Target Start/End: Original strand, 40386474 - 40386876
Alignment:
| Q |
139 |
agaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattat---gtgttttaagtctagagaggagacttc |
235 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||||||||||| ||||| ||| |||||||| | | |||||| ||||| | ||| || |||| |
|
|
| T |
40386474 |
agaaatgtaattttgagccattttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttc |
40386573 |
T |
|
| Q |
236 |
agatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggt |
335 |
Q |
| |
|
|||| ||||||| |||||| || | |||||| |||||| |||||| || ||||| |||| || | ||||||||||| | |||||||||| ||||| |
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|
| T |
40386574 |
agatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaa |
40386673 |
T |
|
| Q |
336 |
gagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactcct |
435 |
Q |
| |
|
|||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40386674 |
cagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactcct |
40386773 |
T |
|
| Q |
436 |
tgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatga |
526 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||| ||||| ||||| |||||| |||||||||||||||| ||||| ||||||||||| |
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|
| T |
40386774 |
tgaatataagatttgatagaaacagtgaagctggaagagcaagaagaatattatccacaatagaagatatggatcgtccaatacttgttatctttgatga |
40386873 |
T |
|
| Q |
527 |
tgt |
529 |
Q |
| |
|
||| |
|
|
| T |
40386874 |
tgt |
40386876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 139 - 529
Target Start/End: Original strand, 40333196 - 40333598
Alignment:
| Q |
139 |
agaaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattat---gtgttttaagtctagagaggagacttc |
235 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||||||||||| ||||| ||| |||||||| | | |||||| ||||| | ||| || |||| |
|
|
| T |
40333196 |
agaaatgtaattttgatccattttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttc |
40333295 |
T |
|
| Q |
236 |
agatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggt |
335 |
Q |
| |
|
|||| ||||||| |||||| || | |||||| |||||| |||||| || ||||| |||| || | ||||||||||| | |||||||||| ||||| |
|
|
| T |
40333296 |
agatgaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaa |
40333395 |
T |
|
| Q |
336 |
gagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactcct |
435 |
Q |
| |
|
|||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40333396 |
cagaaagtccaatatttgaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgacttct |
40333495 |
T |
|
| Q |
436 |
tgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaatatggatcgtccaatgcttgtgatctttgatga |
526 |
Q |
| |
|
||||||||||||| || |||| | | |||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
40333496 |
tgaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaagatatggatcgtccaatacttgtgatctttgatga |
40333595 |
T |
|
| Q |
527 |
tgt |
529 |
Q |
| |
|
||| |
|
|
| T |
40333596 |
tgt |
40333598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 141 - 432
Target Start/End: Complemental strand, 40598499 - 40598208
Alignment:
| Q |
141 |
aaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattatgtgttttaagtctagagaggagacttcagatc |
240 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
40598499 |
aaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataagacttcagatc |
40598400 |
T |
|
| Q |
241 |
aacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaa |
340 |
Q |
| |
|
|| ||||||||||| || |||||| |||| ||||||||||| |||||||||| |||| |||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
40598399 |
aaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaa |
40598300 |
T |
|
| Q |
341 |
agtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgact |
432 |
Q |
| |
|
||| ||| || |||| ||||||||||| ||||||||| || ||||| ||| || ||||||| | | |||||||| ||||||||||||| |
|
|
| T |
40598299 |
agttaagcatctaaagatttttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgact |
40598208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 40257737 - 40257607
Alignment:
| Q |
232 |
cttcagatcaacttttagaggcattgaaggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaat |
331 |
Q |
| |
|
|||| ||||||||||| |||||| || | || | | |||| | ||| ||||| || ||||| ||| |||| |||||||||||| |||||||||||| | |
|
|
| T |
40257737 |
cttcggatcaacttttggaggcactgcaagacggtaattgctatataattggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagt |
40257638 |
T |
|
| Q |
332 |
gggtgagaaagtcaagtatttaaatattttt |
362 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |
|
|
| T |
40257637 |
tggtgagaaagccaagtatttaaagattttt |
40257607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 40310359 - 40310472
Alignment:
| Q |
141 |
aaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaaaggaaatattatgtgttttaagtctagagaggagacttcagatc |
240 |
Q |
| |
|
|||||||| ||||| ||||||| | || ||||||||||||||||||||| ||| |||||| || | |||||| || ||| | | |||||||||||| |
|
|
| T |
40310359 |
aaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtatgttttgagcctataaaagagacttcagata |
40310458 |
T |
|
| Q |
241 |
aacttttagaggca |
254 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
40310459 |
gacttttggaggca |
40310472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 400
Target Start/End: Original strand, 40325801 - 40325898
Alignment:
| Q |
303 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaa |
400 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||| |||||||| |||||| | || ||||| ||||| |||||||| ||| |||| || ||| |||||| |
|
|
| T |
40325801 |
tctggtaaaacaacattagtgaaagcagtggctgagaaagccaagtactccaagttttttgatgaagttttatttatcaatgtgtcccaaaacccaaa |
40325898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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