View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13236_low_6 (Length: 475)
Name: NF13236_low_6
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 131120 - 130679
Alignment:
| Q |
11 |
catcatcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattcttgtctctctgccaaccatttcaattttc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
131120 |
catcttcagcctatccaccgccttcataccctccacctacaggttatcctccaaacgctggtaagtaattcttgtctctctgccaaccatttcaattttc |
131021 |
T |
|
| Q |
111 |
atctcttgcttaatttctaatcacattttttctttctttcaggattctatcctccgccatactgagtactgtgacattatgctactttctcagaaccatc |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
131020 |
atctcttgcttaatttcta-tcacattttttctttctttcaggattctatcctccgccatactgagtactgtgacattatgctactttctcagaaccatc |
130922 |
T |
|
| Q |
211 |
atgctttcggtgatgattagtttttacaagctttgcccagatttctgccttagagcatttgtctaagtttttattttgtaatgcataaaaaaccattttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130921 |
atgctttcggtgatgattagtttttacaagctttgcccagatttctgccttagagcatttgtctaagtttttattttgtaatgcataaaaaaccattttt |
130822 |
T |
|
| Q |
311 |
aatttgttggcatgactttctgtctttctatttatctatctatcattctattaaaactaagatgtgaaatagtgacaatgtgccaccatatcaattgtta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130821 |
aatttgttggcatgactttctgtctttctatttatctatctatcattctattaaaactaagatgtgaaatagtgacaatgtgccaccatatcaattgtta |
130722 |
T |
|
| Q |
411 |
attgctttcgaaagtcatggtatggaggagcaagtcttcaatg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130721 |
attgctttcgaaagtcatggtatggaggagcaagtcttcaatg |
130679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 161928 - 162028
Alignment:
| Q |
11 |
catcatcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattcttgtctctctgccaaccatttcaattttc |
110 |
Q |
| |
|
|||| ||||| |||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
161928 |
catcttcagcttatccaccaccatcataccctccacctgcaggttatcctccaaacactggtaagtaattcttgtttctctgccaaccatttcaattttc |
162027 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
|
| |
|
|
| T |
162028 |
a |
162028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University