View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13236_low_9 (Length: 218)
Name: NF13236_low_9
Description: NF13236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13236_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 38698762 - 38698654
Alignment:
| Q |
13 |
aatatgcaatgaatataaagtggataaattaaaaataaatgatgctagttaatggacaatggaagaagaaaaaagtccaacttccacataccaattatga |
112 |
Q |
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| T |
38698762 |
aatatgcaatgaatataaagtggataaattaaaaataaatgatgctagttaatggacaatggaagaagaaaaaagtccaacttccacataccaattatga |
38698663 |
T |
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| Q |
113 |
atcatgaac |
121 |
Q |
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||||||||| |
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| T |
38698662 |
atcatgaac |
38698654 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 38698616 - 38698545
Alignment:
| Q |
147 |
tgggtgaattttgaattcggatcggcaatatcgttctctaccccaatgcctaccgcaaatatctcactgttt |
218 |
Q |
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| T |
38698616 |
tgggtgaattttggattcggatcggcaatatcgttctctatcccaatgcctaccgcaaatatctcactgttt |
38698545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 24996144 - 24996065
Alignment:
| Q |
13 |
aatatgcaatgaata-taaagtggataaattaaaaataaatgatgctagttaatggacaatggaagaagaaaaaagtcca |
91 |
Q |
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| T |
24996144 |
aatatgcaatgaataataaagtggattaattaaaaataaatgatgccagttaatagacaatggaagaagaaaaaagtcca |
24996065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 8653254 - 8653325
Alignment:
| Q |
147 |
tgggtgaattttgaattcggatcggcaatatcgttctctaccccaatgcctaccgcaaatatctcactgttt |
218 |
Q |
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| T |
8653254 |
tgggtgaattttggattcggatcgacagtatcgttctctaccgcaatacctaccgcaaatatctcactgttt |
8653325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 33968452 - 33968408
Alignment:
| Q |
39 |
aattaaaaataaatgatgctagttaatggacaatggaagaagaaa |
83 |
Q |
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| T |
33968452 |
aattaaaaataaacgatgtcagttaatggacgatggaagaagaaa |
33968408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 25371448 - 25371398
Alignment:
| Q |
33 |
tggataaattaaaaataaatgatgctagttaatggacaatggaagaagaaa |
83 |
Q |
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||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
25371448 |
tggattaattaaaaataaacaatgtcagttaatggacaatggaagaagaaa |
25371398 |
T |
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