View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_high_11 (Length: 440)
Name: NF13237_high_11
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 217 - 430
Target Start/End: Complemental strand, 21575747 - 21575533
Alignment:
| Q |
217 |
gtactttcattgtattgatgcaatgtttaa-aaatttgaaagaatcggttcaatcgattgaaaggggaaacgggttggttcaaccgattgttttcctact |
315 |
Q |
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| T |
21575747 |
gtactttcattgtattgatgcaatgttttagaaatttgaaagaatcggttcaatcgattgaaaggggaaacgggttggttcaaccgattgttttactact |
21575648 |
T |
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| Q |
316 |
ttttaaccgtgattgaatcagttgaaccatgacttaaaaatctcaccaacttgatctttgttcaagttttcaaattattgcagtgatgacactttctttg |
415 |
Q |
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| T |
21575647 |
ttttaaccgtgattgaatcagttgaaccatgacttaaaaatctcaccaactcgatctttgttcaggttttcaaatcattgcagtgatgatactttgtttg |
21575548 |
T |
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| Q |
416 |
tatatctttgttcat |
430 |
Q |
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| T |
21575547 |
tatatctttgttcat |
21575533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 21575966 - 21575792
Alignment:
| Q |
19 |
cctttagcactttgctttctggttctcccacaccttcaacttattcttcatcagatcttgacactcaggtttgtacttttctttgttcaagaaatgaaga |
118 |
Q |
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| T |
21575966 |
cctttagtactttgctttctggttctcccacaccttcaacttattcttcatcagatcttgacactcaggtttgtacttttctttgttcaagaaatgaaga |
21575867 |
T |
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| Q |
119 |
acttgtgtgtatttgtgtgtgaatttaccactttgtttgcttgataccaaaataccaatgctaatgtttgattcc |
193 |
Q |
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| T |
21575866 |
acttgtgtgtatttgtgtgtgaattgaccactttggttgtttgataccatattgttaatgctagtgtttgattcc |
21575792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 21575329 - 21575257
Alignment:
| Q |
336 |
gttgaaccatgacttaaaaatctcaccaacttgatctttgttcaagttttcaaattattgcagtgatgacact |
408 |
Q |
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| T |
21575329 |
gttgaaccatgactcgaaaatctcactaattcgatatttgttcaggtttccaaatcattgcagtgatgacact |
21575257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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