View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_high_25 (Length: 316)
Name: NF13237_high_25
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 13111345 - 13111634
Alignment:
| Q |
10 |
attatactacttgaggaaaatacaagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcac |
109 |
Q |
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| T |
13111345 |
attatactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcac |
13111444 |
T |
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| Q |
110 |
ccatgtgggttaaggtagacatgtttgaattcaagctatatttggaaaataacaatgtggttggagttcgtttgattctcaaagaaataatccattagat |
209 |
Q |
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| T |
13111445 |
ccatgtgggttaaggtagacatgtttgaattcaagctatatttggaaaataacaatgtggttggagttcatttgattctcaaagaaataatccattagat |
13111544 |
T |
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| Q |
210 |
tgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatgctatgaatgttgttttcaacatccaact |
299 |
Q |
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| T |
13111545 |
tgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatgctatgaatgttgttatcaacatccaact |
13111634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 18671834 - 18671545
Alignment:
| Q |
10 |
attatactacttgaggaaaatacaagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcac |
109 |
Q |
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| T |
18671834 |
attatactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagtggttcttacatgcatcttgcggttccatcac |
18671735 |
T |
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| Q |
110 |
ccatgtgggttaaggtagacatgtttgaattcaagctatatttggaaaataacaatgtggttggagttcgtttgattctcaaagaaataatccattagat |
209 |
Q |
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| T |
18671734 |
cgatgtgggttaaggtagacatgtttaaattgaagctatatatggaaaataacaatgtggttggagttcatttgattctcaaagaaataatccattagat |
18671635 |
T |
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| Q |
210 |
tgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatgctatgaatgttgttt-tcaacatccaac |
298 |
Q |
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| T |
18671634 |
tgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagattgatgtcctatgctatgaatgttgtttatcaacatccaac |
18671545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 13004912 - 13004850
Alignment:
| Q |
154 |
gaaaataacaatgtggttggagttcgtttgattctcaaagaaataatccattagattgaaaga |
216 |
Q |
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| T |
13004912 |
gaaaataacaatgtggttggagttcatttgattctcatagaaatcatccattagattgaaaga |
13004850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 13006136 - 13006076
Alignment:
| Q |
196 |
ataatccattagattgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagat |
259 |
Q |
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| T |
13006136 |
ataatccattagtttgaaagatgtggt--ttagagagtggcattt-agaaagactgaaagagat |
13006076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 13121250 - 13121311
Alignment:
| Q |
196 |
ataatccattagattgaaagatgttgtaattagagaatggcatttgagaaagattgaaagagat |
259 |
Q |
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| T |
13121250 |
ataacccatttgattgaaatatgtcgt--ttagagaatggcaattgagaaagactgaaagagat |
13121311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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