View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_high_3 (Length: 621)
Name: NF13237_high_3
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 20 - 612
Target Start/End: Complemental strand, 48961771 - 48961179
Alignment:
| Q |
20 |
tattccccatatacctttataagccagaaacaaacagaaagaaccaactacaatcaattcaaacactatcttcgaatcaaatattgcgaccatcaacatg |
119 |
Q |
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| T |
48961771 |
tattccccatatacctttataagccagaaacaaacagaaagaaccaactacaatcaattcaaacactatcttcgaatcaaatattgcaaccatcaacatt |
48961672 |
T |
|
| Q |
120 |
ttccttcacatggtagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagtta |
219 |
Q |
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| T |
48961671 |
ttccttcacatggtagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagtta |
48961572 |
T |
|
| Q |
220 |
ttgacacactgtacattgctgttcatgtatgcagccattggaattgaagattttgttcttcctttgttattcttatctttcttgtttatttttccttcat |
319 |
Q |
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| T |
48961571 |
ttgacacactgtacattgctgttcatgtatgcagccattggaattgaagattttgttcttcctttgttattcttatctttcttgtttatttttccttcat |
48961472 |
T |
|
| Q |
320 |
cagcacttgaactctcagattcaccaccatcaactttgattgtgttccccttcttgtgaagataattgggttggtgtttcttttgggattgaactagttc |
419 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961471 |
cagcacttgaactctcagattcaccaccgtcaactttgattgtgttccccttcttgtgaagataattgggttggtgtttcttttgggattgaactagttc |
48961372 |
T |
|
| Q |
420 |
catataggctcctctgttttcccctgcaattgttatcactctcatgccagagtcctcagaatctgaaaactttttctccttgctggattctcttcctttc |
519 |
Q |
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| T |
48961371 |
catataggctcctctgttttcccctgcaattgttatcactctcatgccagagtcctcagaatctgaaaactttttctccttgctggattctcttcctttc |
48961272 |
T |
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| Q |
520 |
acagtaatgtgttttccatgatgggaagaattgctgtgattttgagtctgcctatggaattcaccattgctgtgattttgattctccctatgc |
612 |
Q |
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| T |
48961271 |
acagtaatgtgttttccatgatgggaagaattgctgtgattttgagtctgcctatggaattcaccattgctgtgattttgattctccctatgc |
48961179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 9486046 - 9485931
Alignment:
| Q |
133 |
tagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgta |
232 |
Q |
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||||||| |||||||||||||||||| || | ||| |||| ||||||||||| |||| ||||||||||| | | | || ||||| |||||||| | |
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| T |
9486046 |
tagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgca |
9485947 |
T |
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| Q |
233 |
cattgctgttcatgta |
248 |
Q |
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| T |
9485946 |
cattgctattcatgta |
9485931 |
T |
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Back To:
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