View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_high_4 (Length: 581)
Name: NF13237_high_4
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Complemental strand, 40405736 - 40405174
Alignment:
| Q |
8 |
agataattctggctgggacattagctctaatctagaaacatgggttgctgataagaatttcaagataggtgatgctcttcgtaagtactttcat------ |
101 |
Q |
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| T |
40405736 |
agataactctggctgggacattagctctaatctagaaacatgggttgctgataagaatttcaagataggtgatgctcttcgtaagtactttcatctttca |
40405637 |
T |
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| Q |
102 |
-tcaataattaattttctataagctattgaaatcatacatatatacttacatgttcttcaagttccaattcacataaattgaattattttttatatatga |
200 |
Q |
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| T |
40405636 |
ttcaataattaattttctataagctattgaaatcatacatatatacttacatgttcttcaagttccaattcacataaattgaattattttttatatatga |
40405537 |
T |
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| Q |
201 |
accttgttatctttcttccataacatatcaaaaatcaatcattctctttgtgaccatatgtggataaattaaatcatattatgtatctatatgtgtattt |
300 |
Q |
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| T |
40405536 |
accttgctatctttcttccataacatatcaaaaatcaatcattctctttgtgaccatatgtggataaattaaatcatattatgtatctatatgtgtattt |
40405437 |
T |
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| Q |
301 |
tctttt--gaggggttcaaatttaatagataatgaaacttgaaatgtcaagttgattatagtttatagcttttgataacaagatttatgatagaacaaat |
398 |
Q |
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| T |
40405436 |
tcttttgagaggggttcaaatttaatagataatgaaacttgaaatgtcaagttgattatagtttatagcttttgataacaagatttatgatagaacaaat |
40405337 |
T |
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| Q |
399 |
cgtatgcatttacagaacaacttttacaaccgtttgggaatgttttcaaannnnnnncagtttttcaatattcatcgacatacagcgtcgatgaggttac |
498 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40405336 |
tgtatgcatttacagaacaacttttacaattgtttgggaatgttttcgaatttttttcagtttttcaatattcatcgacatacagcgtcgatgaggttac |
40405237 |
T |
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| Q |
499 |
gaaacaaaactttgacacatgcaacacaacaaaagtgttggcaaattatggaaatggaaacac |
561 |
Q |
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| T |
40405236 |
gaaacaaaactttgacacatgcaacacaacaaaagtgttggcaaattacggaaatggaaacac |
40405174 |
T |
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