View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13237_high_6 (Length: 569)
Name: NF13237_high_6
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 118 - 552
Target Start/End: Original strand, 32662050 - 32662482
Alignment:
| Q |
118 |
aagcaatacactgcaaacaggtcattcagcgtactttttatccaaacgaaaaatgaagcaagaaagactttgatgagttataccacaaaactgagaaagg |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
32662050 |
aagcaatacagtgcaaacaggtcattcagcgtactttttatccaaacgaaaaatgaagcaagaaagtctatgatgagttataccacaaaactgagaaagg |
32662149 |
T |
|
| Q |
218 |
gttataaaaatattcattgaagagagaatcagggtagaatctcatcttagactgataaaagcaagattgtgaagagtagaccagatgaagaataatccaa |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
32662150 |
gttataaaaatgttcattgaagagagaatcagggtagaatctcatcttagactgataaaagcaagattttgaagagtagaccagatgaagaatgatccaa |
32662249 |
T |
|
| Q |
318 |
ttgttagaggtagagagggagatcaagaaaaatttaggtcaagtcatgaagaaggatttagaggtagatgatctatatttggacctaatacatgacagga |
417 |
Q |
| |
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| ||| |||||||||||||||||||||||||| | ||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
32662250 |
tagttggaggtagagagggagatcaagaaaaa--aatgtcaaatcatgaagaaagatttaaaggtagatgatctatctttggacctaatacatgacagga |
32662347 |
T |
|
| Q |
418 |
ctataggcatcaatttatacatataaacgatccgacctagtaggaaaaagattggttgttgttttttcttcaccattcgtgattgctttttgacaaatga |
517 |
Q |
| |
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|| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32662348 |
ctgttggcatcaattgatacatataaacgatccgacctagtaggaaaaagactggttgttgttttttcttcaccattcgtgattgctttttgacaaatga |
32662447 |
T |
|
| Q |
518 |
atcaatgttggttgccataaattataggtaggtct |
552 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
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|
| T |
32662448 |
atcaatgttggttgccataaattataggcaggtct |
32662482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 118 - 529
Target Start/End: Original strand, 32636369 - 32636777
Alignment:
| Q |
118 |
aagcaatacactgcaaacaggtcattcagcgtactttttatccaaacgaaaaatgaagcaagaaagactttgatgagttataccacaaaactgagaaagg |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
32636369 |
aagcaatacagtgcaaacaggtcattcagcgtactttttttccaaacgaaacatgaagcaagaaattctttgatgagtgataccacaaaactgagaaagg |
32636468 |
T |
|
| Q |
218 |
gttataaaaatattcattgaagagagaatcagggtagaatctcatcttagactgataaaagcaagattgtgaagagtagaccagatgaagaataatccaa |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
32636469 |
gttataaaaatgttcattgaagagagaatcagggtagaatctcatcttagactgataaaagcaagattttgaagagtagaccagatgaagaatgatccaa |
32636568 |
T |
|
| Q |
318 |
ttgttagaggtagagagggagatcaagaaaaatttaggtcaagtcatgaagaaggatttagaggtagatgatctatatttggacctaatacatgacagga |
417 |
Q |
| |
|
| ||| ||||||||||||||||||| |||||| || ||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
32636569 |
tagttggaggtagagagggagatcaggaaaaaaatatgtcaaatcatgaagaaagatttaaaggtagatgatctatctttggacctaatacatgacagga |
32636668 |
T |
|
| Q |
418 |
ctataggcatcaatttatacatataaacgatccgacctagtaggaaaaagattggttgttgttttttcttcaccattcgtgattgctttttgacaaatga |
517 |
Q |
| |
|
|| | |||||||| | |||||||||||||||||||| |||| || |||| | |||||||||||||||||||||| ||||||||||||||||||| || |
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|
| T |
32636669 |
ctgttggcatcaagtgatacatataaacgatccgacttagt---aagaagactagttgttgttttttcttcaccatctgtgattgctttttgacaaacga |
32636765 |
T |
|
| Q |
518 |
atcaatgttggt |
529 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32636766 |
atcaatgttggt |
32636777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 118 - 328
Target Start/End: Original strand, 32586614 - 32586824
Alignment:
| Q |
118 |
aagcaatacactgcaaacaggtcattcagcgtactttttatccaaacgaaaaatgaagcaagaaagactttgatgagttataccacaaaactgagaaagg |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32586614 |
aagcaatacagtgcaaacaggtcattcagcgtactttttatccaaacgaaaaatgaagcaagaaagactttgatgagttataccacaaaactgagaaagg |
32586713 |
T |
|
| Q |
218 |
gttataaaaatattcattgaagagagaatcagggtagaatctcatcttagactgataaaagcaagattgtgaagagtagaccagatgaagaataatccaa |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32586714 |
gttataaaaatgttcattgaagagagaatcagggtagaatctcatcttagactgataaaagcaagattgtgaagagtagaccagatgaagaataatccaa |
32586813 |
T |
|
| Q |
318 |
ttgttagaggt |
328 |
Q |
| |
|
| ||||||||| |
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|
| T |
32586814 |
tagttagaggt |
32586824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 353 - 552
Target Start/End: Original strand, 32586821 - 32587020
Alignment:
| Q |
353 |
aggtcaagtcatgaagaaggatttagaggtagatgatctatatttggacctaatacatgacaggactataggcatcaatttatacatataaacgatccga |
452 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
32586821 |
aggtcaagtcatgaagagggatttagaggtagatgatctatatttggacctaatacatgacaggactataggcatcaatttatacatataaacgacccga |
32586920 |
T |
|
| Q |
453 |
cctagtaggaaaaagattggttgttgttttttcttcaccattcgtgattgctttttgacaaatgaatcaatgttggttgccataaattataggtaggtct |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32586921 |
cctagtaggaaaaagattggttgttgttttttcttcaccattcgtgattgctttttgacaaatgaatcaatgttggttgccataaattataggcaggtct |
32587020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 32586403 - 32586506
Alignment:
| Q |
10 |
caatgaagagagcagcaccacatcaattattttgagacaaaaagggcaaaatttttgtaatattacagccatcaatatcatatccaacattaattacatc |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32586403 |
caatgaagagagcagcaccatatcaattatttcgagacaaaaagggcaaaaattttgtaatattacagccatcaatatcatatccaacattaattacatc |
32586502 |
T |
|
| Q |
110 |
atta |
113 |
Q |
| |
|
|||| |
|
|
| T |
32586503 |
atta |
32586506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 32636157 - 32636260
Alignment:
| Q |
10 |
caatgaagagagcagcaccacatcaattattttgagacaaaaagggcaaaatttttgtaatattacagccatcaatatcatatccaacattaattacatc |
109 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32636157 |
caatgaagagagcagcaccatatcaatcattttgagacaaaaagggcaaaaattttgtaatattacagccatcaatatcatatccaacattaattacatc |
32636256 |
T |
|
| Q |
110 |
atta |
113 |
Q |
| |
|
|||| |
|
|
| T |
32636257 |
atta |
32636260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 32661839 - 32661942
Alignment:
| Q |
10 |
caatgaagagagcagcaccacatcaattattttgagacaaaaagggcaaaatttttgtaatattacagccatcaatatcatatccaacattaattacatc |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32661839 |
caatgaagagagcagcaccatatcaattatttcgagacaaaaagggcaaaaattttgtaatattacagccatcaatatcatatccaacattaattacatc |
32661938 |
T |
|
| Q |
110 |
atta |
113 |
Q |
| |
|
|||| |
|
|
| T |
32661939 |
atta |
32661942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 9e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 373 - 545
Target Start/End: Original strand, 41142359 - 41142530
Alignment:
| Q |
373 |
atttagaggtagatgatctatatttggacctaatacatgacaggactataggcatcaatttatacatataaacgatccgacctagtaggaaaaagattgg |
472 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || |||||| || || | ||||||||||||||||||||| |
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|
| T |
41142359 |
atttagaggtagatgatctatctttggacctaatacatgacaggactatttgcatcaattgatccatatagac-ataccacctagtaggaaaaagattgg |
41142457 |
T |
|
| Q |
473 |
ttgttgttttttcttcaccattcgtgattgctttttgacaaatgaatcaatgttggttgccataaattatagg |
545 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||| |||||||| |||| ||||||| |||||||||||| |
|
|
| T |
41142458 |
ttgttgttttttcttcactatcagtgattgctttctgaaaaatgaattaatgatggttgctataaattatagg |
41142530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 41142089 - 41142204
Alignment:
| Q |
122 |
aatacactgcaaacaggtcattcagcgtactttttatccaaacgaaaaatgaagcaagaaagactttgatgagttataccacaaaactgagaaagggtta |
221 |
Q |
| |
|
|||||| |||||||| |||| ||||| |||| ||||||||||| ||| ||||| |||||||| |||||||||| ||||||||||| | ||||||| ||| |
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|
| T |
41142089 |
aatacagtgcaaacatgtcactcagcttactatttatccaaacaaaagatgaaacaagaaagtatttgatgagtgataccacaaaattaagaaaggatta |
41142188 |
T |
|
| Q |
222 |
taaaaatattcattga |
237 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
41142189 |
taaaaatgttcattga |
41142204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 472 - 545
Target Start/End: Complemental strand, 55863587 - 55863514
Alignment:
| Q |
472 |
gttgttgttttttcttcaccattcgtgattgctttttgacaaatgaatcaatgttggttgccataaattatagg |
545 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
55863587 |
gttgttgttttttcttcggcattcgtgattgctttttgaaaaatgaatcaacgttggttgccataaattatagg |
55863514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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