View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13237_low_1 (Length: 1282)

Name: NF13237_low_1
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13237_low_1
NF13237_low_1
[»] chr5 (5 HSPs)
chr5 (1-1275)||(41257017-41258298)
chr5 (61-170)||(41256951-41257059)
chr5 (271-328)||(3147170-3147227)
chr5 (128-180)||(41256685-41256737)
chr5 (93-172)||(41256766-41256844)
[»] chr3 (9 HSPs)
chr3 (582-682)||(22281327-22281427)
chr3 (296-371)||(7889145-7889219)
chr3 (271-328)||(24092379-24092436)
chr3 (296-371)||(28802760-28802836)
chr3 (333-368)||(25519474-25519509)
chr3 (271-322)||(31731944-31731995)
chr3 (296-366)||(50376231-50376299)
chr3 (393-443)||(50376177-50376227)
chr3 (271-312)||(3533997-3534038)
[»] chr4 (1 HSPs)
chr4 (310-376)||(34581591-34581658)
[»] chr6 (1 HSPs)
chr6 (297-365)||(33735428-33735497)
[»] chr8 (2 HSPs)
chr8 (298-366)||(12196924-12196992)
chr8 (298-366)||(12441352-12441420)
[»] chr7 (1 HSPs)
chr7 (271-309)||(6497163-6497201)
[»] chr1 (1 HSPs)
chr1 (334-376)||(32029892-32029934)


Alignment Details
Target: chr5 (Bit Score: 1179; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 1179; E-Value: 0
Query Start/End: Original strand, 1 - 1275
Target Start/End: Original strand, 41257017 - 41258298
Alignment:
Q  1 attaagattatgagctgtatcctgtaattgtgtttgtagcatgctactagttgttg-------tgacttgtgacacaacacaatccttaattgaatttga 93  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  41257017 attaagattatgagctgtatcctgcaattgtgtttgtagcatgctactagttgttgtgagttgtgacttgtgacacaacacaatccttaattgaatttga 41257116  T
Q  94 tttgatttgatttaaggtttcattttttgagctgttaaaattaggagccggtattgtgcaattgtatttgtagcatgttgatagttgccgtgataatact 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41257117 tttgatttgatttaaggtttcattttttgagctgttaaaattaggagccggtattgtgcaattgtatttgtagcatgttgatagttgccgtgataatact 41257216  T
Q  194 gtttttgttacattgttcttggagtttgttggaattttggttttgaaatcttttaatggtatggagcagtgttgtcatgtcaaatagcggctatagtgta 293  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  41257217 gtttttgttacattgttcttggagttcgttggaattttggttttgaaatcttttaatggtatggagcagtgttctcatgtcaagtagcggctatagtgta 41257316  T
Q  294 ttggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatagtagcggtataagttataacattgcaat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41257317 ttggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatagtagcggtataagttataacattgcaat 41257416  T
Q  394 gtagtataatttgaacaaaccgttactttcaacgatatgcaattgacaacgctagtatgaggttgtaatttaaaatgctgacagttgacactgctgttag 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41257417 gtagtataatttgaacaaaccgttactttcaacgatatgcaattgacaacgctagtatgaggttgtaatttaaaatgctgacagttgacactgctgttag 41257516  T
Q  494 ttttttctagtgtcacccttttaacaggcatggcaacaaaaggcttttaggttgtaaagactgatttttgtttgtcttgcagatgttattcagaaactta 593  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41257517 ttttttctagtgtcacccttttaacaggcatgacaacaaaaggcttttaggttgtaaagactgatttttgtttatcttgcagatgttattcagaaactta 41257616  T
Q  594 ttgaaaggggcaaacatattttggctgtcaagtttatttttcacttcaaacttactgagaagaccccacccgttcctgttttgaaagcttatgtgaatga 693  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41257617 ttgaaaggggcaaacaaattttggctgtcaagtttatttttcacttcaaacttactgagaagaccccacccgttcctgttttgaaagcttatgtgaatga 41257716  T
Q  694 tgcggagaaacttgctaaaagactcgcctccgagggaaagtcactggtaagtatgaagccccggtttatttcctggtgcatgatgtgtctgcctatacta 793  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  41257717 tgcggagaaacttgctaaaagactcgcctccgagggaaagtcgctggtaagtatggagccccggtttatttcctggtgcatgatgtgactgcctatacta 41257816  T
Q  794 tatttatttagttcttttctttcnnnnnnngcagaatgaaataaaatctagagaaattcatgcactgaaatcagtcattaaggttattgagagttacaac 893  Q
    |||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41257817 tatttatttagttcttttctttctttttttgcagaatgagataaaatctagagaaattcatgcactgaaatcagtcattaaggttattgagagttacaac 41257916  T
Q  894 cttgattctgagtttccgcgtgcaagcattgaacggcgtatagaagaattgagcaagcagcacaaggttggtggaaaacccgttgcgccagcttttgctg 993  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41257917 cttgattctgagtttccgcgtgcaagcattgaacggcgtatagaagaattgagcaagcagcgcaaggttggtggaaaacccgttgcgccagcttttgctg 41258016  T
Q  994 caatgcctcttcagcatccacaacaacaactaagtgggatcaagcgtcctctaacatctgctccattcggtccagcacctgtccttaataatgccggtgg 1093  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41258017 caatgcctcttcagcatccacaacaacaactaagtgggatcaagcgtcctctaacatctgctccattcggtccagcacctgtccttaataatgccggtgg 41258116  T
Q  1094 caccccttcaaccatacaccaacaccaacaacctcatttccagtcaacaagtttgttgccggaacatccaaatccatacatgagtatgccgccaaccacg 1193  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41258117 caccccttcaaccatacaccaataccaacaacctcatttccagtcaacaagtttgttgccggaacatccaaatccatacatgagtatgccgccaaccacg 41258216  T
Q  1194 ccatttggcatgaaggcggcaactccaacagtttcttcctatacaggtccttcaactgggccttatggtcttgatgatgtcc 1275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41258217 ccatttggcatgaaggcggcaactccaacagtttcttcctatacaggtccttcaactgggccttatggtcttgatggtgtcc 41258298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 41256951 - 41257059
Alignment:
Q  61 ttgtgacacaacacaatccttaattgaatttgatttgatttgatttaaggtttcattttttgagctgttaaaattaggagccggtattgtgcaattgtat 160  Q
    |||||||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |||| |||| ||| | ||||  ||||||||| |    
T  41256951 ttgtgacagaacacaatcctttatcgaatttgatttggtttgatttaaggtttcattttttgagctattaagattatgag-ctgtatcctgcaattgtgt 41257049  T
Q  161 ttgtagcatg 170  Q
    ||||||||||    
T  41257050 ttgtagcatg 41257059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 3147227 - 3147170
Alignment:
Q  271 tgtcaaatagcggctatagtgtattggaattttaacaaaccgctattattccgtgata 328  Q
    ||||||||||||||||||| ||| |||||||| || |||||||||| ||| |||||||    
T  3147227 tgtcaaatagcggctatagcgtagtggaatttgaagaaaccgctatcattgcgtgata 3147170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 41256685 - 41256737
Alignment:
Q  128 ttaaaattaggagccggtattgtgcaattgtatttgtagcatgttgatagttg 180  Q
    |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||||    
T  41256685 ttaagattaggagccggtatcgtgcaattttatttgttgcatgttaatagttg 41256737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 41256766 - 41256844
Alignment:
Q  93 atttgatttgatttaaggtttcattttttgagctgttaaaattaggagccggtattgtgcaattgtatttgtagcatgtt 172  Q
    |||||||||||| |||||||||||||||| |||| || | ||||||||| |||||  ||||  ||| |||||||||||||    
T  41256766 atttgatttgatataaggtttcatttttt-agcttttcagattaggagctggtatcatgcagctgtgtttgtagcatgtt 41256844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 582 - 682
Target Start/End: Original strand, 22281327 - 22281427
Alignment:
Q  582 ttcagaaacttattgaaaggggcaaacatattttggctgtcaagtttatttttcacttcaaacttactgagaagaccccacccgttcctgttttgaaagc 681  Q
    ||||||||||| |||||| |||||||||| || |||||||||||||| ||||| | ||||  ||| |||| ||||  ||||| |||||| ||||||||||    
T  22281327 ttcagaaacttgttgaaaagggcaaacatgttctggctgtcaagtttgtttttgaattcagtcttgctgataagattccacctgttcctattttgaaagc 22281426  T
Q  682 t 682  Q
    |    
T  22281427 t 22281427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 7889145 - 7889219
Alignment:
Q  296 ggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatagtagcg 371  Q
    ||||||| ||||||| |||||| |||||||||||||| |||||| ||| ||||||||| || ||||||||| ||||    
T  7889145 ggaatttcaacaaactgctattgttccgtgatatgtg-ttagtacaaagtgttgtcaattaccggctatagcagcg 7889219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 24092436 - 24092379
Alignment:
Q  271 tgtcaaatagcggctatagtgtattggaattttaacaaaccgctattattccgtgata 328  Q
    ||||||||||||||||||||| |  ||||||||||||||| |||| ||||||| ||||    
T  24092436 tgtcaaatagcggctatagtgaaacggaattttaacaaactgctactattccgcgata 24092379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 28802836 - 28802760
Alignment:
Q  296 ggaattttaacaaaccgctattattccgtgatatg-tgtttagtataaattgttgtcaaatagcggctatagtagcg 371  Q
    ||||||||| |||||| ||||| ||||| |||||| | |||| |||||| ||||||||||||| |||||||| ||||    
T  28802836 ggaattttaccaaaccactattgttccgcgatatgctatttaatataaagtgttgtcaaatagtggctatagcagcg 28802760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 368
Target Start/End: Complemental strand, 25519509 - 25519474
Alignment:
Q  333 tttagtataaattgttgtcaaatagcggctatagta 368  Q
    ||||||| ||||||||||||||||||||||||||||    
T  25519509 tttagtacaaattgttgtcaaatagcggctatagta 25519474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 31731944 - 31731995
Alignment:
Q  271 tgtcaaatagcggctatagtgtattggaattttaacaaaccgctattattcc 322  Q
    ||||||||||||||||||||||| |||||||| ||||||  |||||| ||||    
T  31731944 tgtcaaatagcggctatagtgtaatggaatttgaacaaattgctattgttcc 31731995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 50376299 - 50376231
Alignment:
Q  296 ggaattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 366  Q
    ||||||||||||||||| |||||||| | | ||   |||||||| ||| ||||||||||||||||||||||    
T  50376299 ggaattttaacaaaccgttattattctgcggta--cgtttagtacaaaatgttgtcaaatagcggctatag 50376231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 50376227 - 50376177
Alignment:
Q  393 tgtagtataatttgaacaaaccgttactttcaacgatatgcaattgacaac 443  Q
    ||||||||| ||||||||||||| || |||| ||||| |||||||||||||    
T  50376227 tgtagtatagtttgaacaaaccgctattttctacgatctgcaattgacaac 50376177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 3533997 - 3534038
Alignment:
Q  271 tgtcaaatagcggctatagtgtattggaattttaacaaaccg 312  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  3533997 tgtcaaatagcagctatagtgttgtggaattttaacaaaccg 3534038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 34581591 - 34581658
Alignment:
Q  310 ccgctattattccgtgatatg-tgtttagtataaattgttgtcaaatagcggctatagtagcggtata 376  Q
    |||||||| |||||||||| | | ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  34581591 ccgctattgttccgtgatacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctata 34581658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 33735497 - 33735428
Alignment:
Q  297 gaattttaacaaaccgctattattccgtgatatg-tgtttagtataaattgttgtcaaatagcggctata 365  Q
    ||||||||||||||| || || |||||||||||| | ||||||| ||| ||||||||||||||| |||||    
T  33735497 gaattttaacaaaccacttttgttccgtgatatgctatttagtacaaaatgttgtcaaatagcgactata 33735428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 12196924 - 12196992
Alignment:
Q  298 aattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 366  Q
    |||||||||||||||||||| || ||  |||||||||||||| ||  |||||| ||||||| |||||||    
T  12196924 aattttaacaaaccgctattgtttcgctatatgtgtttagtacaatgtgttgtaaaatagcagctatag 12196992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 12441352 - 12441420
Alignment:
Q  298 aattttaacaaaccgctattattccgtgatatgtgtttagtataaattgttgtcaaatagcggctatag 366  Q
    |||||||||||||||||||| || ||  |||||||||||||| ||  |||||| ||||||| |||||||    
T  12441352 aattttaacaaaccgctattgtttcgctatatgtgtttagtacaatgtgttgtaaaatagcagctatag 12441420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 6497163 - 6497201
Alignment:
Q  271 tgtcaaatagcggctatagtgtattggaattttaacaaa 309  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  6497163 tgtcaaatagcggctatagtgtaatggaatttgaacaaa 6497201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 32029934 - 32029892
Alignment:
Q  334 ttagtataaattgttgtcaaatagcggctatagtagcggtata 376  Q
    |||||||||| |||||||||||||| |||||||||||| ||||    
T  32029934 ttagtataaagtgttgtcaaatagcagctatagtagcgctata 32029892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University