View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13237_low_10 (Length: 477)
Name: NF13237_low_10
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 459
Target Start/End: Original strand, 3744806 - 3745256
Alignment:
| Q |
9 |
agcagagacagcatcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttct |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744806 |
agcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttct |
3744905 |
T |
|
| Q |
109 |
ttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744906 |
ttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatca |
3745005 |
T |
|
| Q |
209 |
cgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3745006 |
cgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatga |
3745105 |
T |
|
| Q |
309 |
tgtcttctccacattgtcatctgaaagatccatcatctggtgcaaagcgtgtagcactggagcatctaaacccatcaacctgaaatccattctcacactt |
408 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3745106 |
tgtcttctccatattgtcatctgaaaggtccatcatttggtgaagagcgtgtagcactggagcatccaaacccatcaacctgaaatccattctcacactt |
3745205 |
T |
|
| Q |
409 |
tttcttgattttcttctactttgatgaaaaatgatatttttcaatgttaga |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3745206 |
tttcttgattttcttctactttgatgaaaaatgatatttttcaatgttaga |
3745256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 48303031 - 48303219
Alignment:
| Q |
30 |
agcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctc |
129 |
Q |
| |
|
||||||||| || | |||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
48303031 |
agcattctctggtaacacaaatttcctcataaacttaccaacccttctttccatcttcaaatattt---accaccttctttctcttcttctctcttcctt |
48303127 |
T |
|
| Q |
130 |
tctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatga |
221 |
Q |
| |
|
|| |||||||||| |||||| || |||||||| ||||||||||| || || ||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
48303128 |
tcaccgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatga |
48303219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 10462270 - 10462162
Alignment:
| Q |
113 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
212 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| |||||||||||||| |||| ||| ||| |||| |
|
|
| T |
10462270 |
cttcttccctcttcctctcgccggttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaa |
10462171 |
T |
|
| Q |
213 |
cacgtatga |
221 |
Q |
| |
|
||| |||| |
|
|
| T |
10462170 |
tacgaatga |
10462162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 10539854 - 10539977
Alignment:
| Q |
113 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
212 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||| ||| |||| || || |||| |
|
|
| T |
10539854 |
cttcttccctcttcctctcgccggttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaa |
10539953 |
T |
|
| Q |
213 |
cacgtatgaattctgatcttcctt |
236 |
Q |
| |
|
|||||| || || |||| |||||| |
|
|
| T |
10539954 |
cacgtacgagttttgatattcctt |
10539977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 10543464 - 10543543
Alignment:
| Q |
79 |
tccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatc |
158 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || ||||| |
|
|
| T |
10543464 |
tccattctcaaatacttaacaccttcttctacttcttcttccctcttcctttctccacttatcacaaccacattttcatc |
10543543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University