View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_12 (Length: 434)
Name: NF13237_low_12
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 7417634 - 7417217
Alignment:
| Q |
8 |
cgaagaatatgagttcgaataaaaacaactttatatgtatgaatggagt------------ttgtttattgattagagtagtattatttgattcatgtga |
95 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7417634 |
cgaaaaatatgagttcgaataaaaacaactttatatgtatgaatggagtcttcgttaagctttgtttattgattagagtagtattatttgattcatgtga |
7417535 |
T |
|
| Q |
96 |
gtggaaaaatagtcccttatacatgcccgatcaccaagaaacatgtgtattgatggaaagtttgttgaacctcatgtgggtcctcgagctattgctttct |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7417534 |
gtggaaaaatagtcccttatacatgcccgatcaccaagaaacatgtgtattgatggaaagtttgttgaacctcatgtgggtcctcgagctattgctttct |
7417435 |
T |
|
| Q |
196 |
cactatcacatgcatatataaataatgacccacacacacccttcaaactcactcacacaacc--ctctaatttcacaccaaaagaaagtcacaaaatcga |
293 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
7417434 |
cactatcacatgca--tataaataatgacccacacacacccttcaaactcactcacataaccctctctaatttcacaccaaaagaaagtcacaaaatcga |
7417337 |
T |
|
| Q |
294 |
ccaattatggcgccagtgcaattattggaacttcctagttgggtcacattgtttgcaacatttgtcatcctcctcctcttcagccgccgcctccgccgcc |
393 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7417336 |
ccaattatggagccagtgcaattattggaacttcctagttgggtcacattgtttgcaacatttgtcatcctcctcctcttcagccgccgcctccgccgcc |
7417237 |
T |
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| Q |
394 |
acaaatacaatctaccacca |
413 |
Q |
| |
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|||||||||||||||||||| |
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| T |
7417236 |
acaaatacaatctaccacca |
7417217 |
T |
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