View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_18 (Length: 373)
Name: NF13237_low_18
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 22138556 - 22138184
Alignment:
| Q |
1 |
acagaggtagttagttaaattaagtatgtttagaatgacgaggatgcaatgattttgtcaaagttctaaatcgtagcttttgcaaaaatcaaagcgacac |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22138556 |
acagaggtagttagttaaattaagtatgtttataatgacgaggatgcaatgattttgtcaaagttctaaattgtagcttttgcaaaaatcaaagcgacac |
22138457 |
T |
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| Q |
101 |
actctgtaattttgcaaaattcgcatagtcactgttgtcaacccatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138456 |
actctgtaattttgcaaaattcgcatagtcactgttgtcaactcatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgta |
22138357 |
T |
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| Q |
201 |
ttccattcgattgactataactcttcgttcaatgtctcaggtgataaatcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggnnnnn |
300 |
Q |
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| T |
22138356 |
ttacattcgattgactataactcttcgttcaatgtctcaggtgataaatcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggaaaaa |
22138257 |
T |
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| Q |
301 |
nnnctctcttctcaaatttttctccaaataaatatgtgagctggaatcctaggcgttcagattttccactttc |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138256 |
aaactctcttctcaaatttttctccaaataaatatgtgagctggaatcctaggcgttcagattttccactttc |
22138184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 40506065 - 40505693
Alignment:
| Q |
1 |
acagaggtagttagttaaattaagtatgtttagaatgacgaggatgcaatgattttgtcaaagttctaaatcgtagcttttgcaaaaatcaaagcgacac |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40506065 |
acagaggtagttagttaaattaagtatgtttataatgacgaggatgcaatgattttgtcaaagttctaaattgtagcttttgcaaaaatcaaagcgacac |
40505966 |
T |
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| Q |
101 |
actctgtaattttgcaaaattcgcatagtcactgttgtcaacccatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505965 |
actctgtaattttgcaaaattcgcatagtcactgttgtcaactcatctgcactacagacatgtaatcttcctgttaattagtttgagtttcattcttgta |
40505866 |
T |
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| Q |
201 |
ttccattcgattgactataactcttcgttcaatgtctcaggtgataaatcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggnnnnn |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505865 |
ttacattcgattgactataactcttcgttcaatgtctcaggtgataaatcatcaacggattgggacaaggcatggtcaaacttcaagaagcagggaaaaa |
40505766 |
T |
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| Q |
301 |
nnnctctcttctcaaatttttctccaaataaatatgtgagctggaatcctaggcgttcagattttccactttc |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505765 |
aaactctcttctcaaatttttctccaaataaatatgtgagctggaatcctaggcgttcagattttccactttc |
40505693 |
T |
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