View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_19 (Length: 348)
Name: NF13237_low_19
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 11974892 - 11975230
Alignment:
| Q |
1 |
atatctttgaaaataggcatcccaacaaagtcgttgaaatactggcggaatttgtcttctgtagagttttctaaatccgattgaaatccttctgctgtca |
100 |
Q |
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| T |
11974892 |
atatctttgaaaataggcatcccaacaaagtcgttgaaatactggcggaatttgtcttctgtagagttttctaaatccgattgaaatccttctgctgtca |
11974991 |
T |
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| Q |
101 |
agagatgaattaatctctcgacatcaatcaaatgatctcgaggaaacaatgaacaaaattcaaaacaaaacttctgagggcttggaagtttgtcgtagta |
200 |
Q |
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| T |
11974992 |
agagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctgagggcttggaagtttgtcgtagta |
11975091 |
T |
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| Q |
201 |
tctaaccttaagctcttttagaaattcctccttattcagatcagcaacggcaagatcagcacaatgattgtttacaaatattgctttgaatattatcaag |
300 |
Q |
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| T |
11975092 |
tctaaccttaagctcttttagaaattcctccttattcagatcagcaacggcaagatcagcacaatgattgtttacaaatattgctttgaatattatcaag |
11975191 |
T |
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| Q |
301 |
aaaggaactccaccacaatccatcaccatcttcctttgc |
339 |
Q |
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| T |
11975192 |
aaaggaactccaccacaatccatcaccatcttcctttgc |
11975230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 11902680 - 11902770
Alignment:
| Q |
83 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatctcgaggaaacaatgaacaaaattcaaaacaaaactt |
173 |
Q |
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| T |
11902680 |
gaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 11731490 - 11731432
Alignment:
| Q |
106 |
tgaattaatctctcgacatcaatcaaatgatctcgaggaaacaatgaacaaaattcaaa |
164 |
Q |
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| T |
11731490 |
tgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaa |
11731432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 12038603 - 12038509
Alignment:
| Q |
83 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatctcgaggaaacaatgaacaaaattcaaaacaaaacttctga |
177 |
Q |
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| T |
12038603 |
gaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctga |
12038509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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