View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_2 (Length: 982)
Name: NF13237_low_2
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 776; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 176 - 963
Target Start/End: Complemental strand, 41256506 - 41255719
Alignment:
| Q |
176 |
aaaattgcacgataccggctcctaatcttaaaaccttactaataaaaccctaatcaaatcaaattgaattaagtgattgttaccttgaactctatctgac |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41256506 |
aaaattgcacgataccggctcctaatcttaaaaccttactaataaaaccctaatcaaatcaaattgaattaagtgattgttaccttgaactctatctgac |
41256407 |
T |
|
| Q |
276 |
aaagcaataatctgatacaggtcaggcagttcatcattagtagcagcagtagcagaataagcagcaagctcaccaacattcaattcagacaaaaaatcat |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41256406 |
aaagcaataatctgatacaggtcaggcagttcatcattagtagcagcagtagcagaataagcagcaagctcaccaacattcaattcaggcaaaaaatcat |
41256307 |
T |
|
| Q |
376 |
acacagcaacaaattgcaaaaaagccatggtccaacatgattcatgaacatcattcaccaagttaaccttccacagactaaacaatctcttagctttctt |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41256306 |
acacagcaacaaattgcaaaaaagccatggtccaacatgattcatgaacatcattcaccaagttaaccttccacagactaaacaatctcttagctttctt |
41256207 |
T |
|
| Q |
476 |
cctaacatcaaaactaacataaggagaaaaaaccctcaactgctgaaacaaaaaattacaacttctcttattcaaacgaggtaattcctttccatcaacc |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41256206 |
cctaacatcaaaactaacataaggagaaaaaaccctcaactgctgaaacaaaaaattacaacttctcttattcaaacgaggtaattcctttccatcaacc |
41256107 |
T |
|
| Q |
576 |
actgcatttgcaccaaaaacaccatcaagtgcatcaagaaccatatctgcaggatttgatgcacatttaaaagcaatctgaagttcatccttgattgtta |
675 |
Q |
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| T |
41256106 |
actgcatttgcaccaaaaacaccatcaagtgcatcaagaaccatatctgcaggatttgatgcacatttaaaagcaatctgaagttcatccttgattgtta |
41256007 |
T |
|
| Q |
676 |
ccttatccttaaaattcacacgaatgaaatcccttaacccttttccatcattcttcttgcacaatgcactcaacccttccaaatgagttatagaccctga |
775 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41256006 |
ccttatccttaaaattcacacgaatgaaatcccttaacccttttccatcattcttcttgcacaatgcactcaacccttccaaatgagttatagaccctga |
41255907 |
T |
|
| Q |
776 |
aactgcaccgttttgaattgtagggttagaattcgaagatgggtcattattgattgatgaaaagttttgaattttgggttttggggtggataattttgaa |
875 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
41255906 |
aactgcaccgttttgaattgtagggttagaattcgaagatgggtcattattgattgatgaaaagttttgatttttgggttttgtggtggataattttgaa |
41255807 |
T |
|
| Q |
876 |
gaagagattgatgggtcgttgtgattttgttggaattgtgattctagggattgaaggtgaaggaaacgttgagagagagtgttgtgga |
963 |
Q |
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| T |
41255806 |
gaagagattgatgggtcgttgtgattttgttggaattgtgattctagggattgaaggtgaaggaaacgttgagagagagtgttgtgga |
41255719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 381
Target Start/End: Complemental strand, 41256887 - 41256510
Alignment:
| Q |
3 |
aaatcaaattcaattaaggattaagttgtgtcacaacaactactaacatgctacaaacatagctacatgataccagctcctaatctgaaaagctaaaaaa |
102 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
41256887 |
aaatcaaattcaatta-ggattgtgttgtgtcacaacaactactaacatgctacaaacacagctgcatgataccagctcctaatctgaaaagctaaaaaa |
41256789 |
T |
|
| Q |
103 |
tgaaaccttatatcaaatcaaattcaattcaggattgtgactgtgtcacatcaactattaacatgcaacaaataaaattgcacgataccggctcctaatc |
202 |
Q |
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| T |
41256788 |
tgaaaccttatatcaaatcaaattcaattcaggattgtgactgtgtcacatcaactattaacatgcaacaaataaaattgcacgataccggctcctaatc |
41256689 |
T |
|
| Q |
203 |
ttaaaaccttactaataaaaccctaatcaaatcaaattgaattaagtgattgttaccttgaactctatctgacaaagcaataatctgatacaggtcaggc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41256688 |
ttaaaaccttactaataaaaccctaatcaaatcaaattgaattaagtgattgttaccttgaactctatctgacaaagcaataatctgatacaggtcaagc |
41256589 |
T |
|
| Q |
303 |
agttcatcattagtagcagcagtagcagaataagcagcaagctcaccaacattcaattcagacaaaaaatcatacacag |
381 |
Q |
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| T |
41256588 |
agttcatcattagtagcagcagtagcagaataagcagcaagctcaccaacattcaattcagacaaaaaatcatacacag |
41256510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 41256987 - 41256928
Alignment:
| Q |
2 |
caaatcaaattcaattaaggattaagttgtgtcacaacaactactaacatgctacaaaca |
61 |
Q |
| |
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|||||||||||| || ||||||| ||| ||||||||||||| ||||||||||||||||| |
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| T |
41256987 |
caaatcaaattcgataaaggattgtgttctgtcacaacaacttctaacatgctacaaaca |
41256928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 41257203 - 41257151
Alignment:
| Q |
154 |
caactattaacatgcaacaaataaaattgcacgataccggctcctaatcttaa |
206 |
Q |
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||||||| ||||||| ||||||| |||||||| ||||||||||||||| |||| |
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| T |
41257203 |
caactatcaacatgctacaaatacaattgcacaataccggctcctaattttaa |
41257151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 41257075 - 41256983
Alignment:
| Q |
33 |
tcacaacaactactaacatgctacaaacatagctacatgataccagctcctaatctgaaaagct-aaaaaatgaaaccttatatcaaatcaaat |
125 |
Q |
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|||||||||||| || ||||||||||||| | | || ||||| ||||| |||||| || |||| |||||||||||||||| |||||| ||||| |
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| T |
41257075 |
tcacaacaactagtagcatgctacaaacacaattgcaggatac-agctcataatcttaatagctcaaaaaatgaaaccttaaatcaaaccaaat |
41256983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41257121 - 41257084
Alignment:
| Q |
1 |
tcaaatcaaattcaattaaggattaagttgtgtcacaa |
38 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
41257121 |
tcaaatcaaattcaattaaggattgtgttgtgtcacaa |
41257084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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