View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_21 (Length: 337)
Name: NF13237_low_21
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_21 |
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| [»] scaffold0512 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 48418284 - 48417975
Alignment:
| Q |
11 |
cacagagaatgcattgttttcatacttgtagagggtcgttggtttcaatggcgatgaatcgacgtgattgtcgatatatacaacagaagatcagagtggg |
110 |
Q |
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| T |
48418284 |
cacagagaatgcattgttttcatacttgtagagggtcgttggtttcaatggcgatgaatcgacgtgattgtcgatatatacaacagaagatcagaatggg |
48418185 |
T |
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| Q |
111 |
caacccaacagatgttgccctaatcctctatgaagtgaaggattctttacacatgctcatgacacacccttatggaaaccacttgattcaaaagattttt |
210 |
Q |
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| T |
48418184 |
caacccaacagatgttgcgctaatcctctatgaagtgaaggattctttacacatgctcatgacacacccttatggaaaccacttgattcaaaagattttt |
48418085 |
T |
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| Q |
211 |
gaagcaaggagaggtatcatcacccgtgatcagaagcattctcttgtttacttgattatcttgaattaccaaaagctgagagacgtgtgcatggactttc |
310 |
Q |
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| T |
48418084 |
gaagcaaggagaggtatcatcacccgtgatcagaagcattctcttgtttacttgattatctcgaattaccaaaagctgagaaacgtgtgcatggactttc |
48417985 |
T |
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| Q |
311 |
atgggtatgt |
320 |
Q |
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| T |
48417984 |
atgggtatgt |
48417975 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 729817 - 729911
Alignment:
| Q |
133 |
atcctctatgaagtgaaggattctttacacatgctcatgacacacccttatggaaaccacttgattcaaaagatttttgaagcaaggagaggtat |
227 |
Q |
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| T |
729817 |
atcctcttagaagtgaaggattatttacatgagctcatgacacatcgttttggcagctatttgattcaaaagatttttcaagcaaggaggggtat |
729911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 2365 - 2406
Alignment:
| Q |
169 |
atgacacacccttatggaaaccacttgattcaaaagattttt |
210 |
Q |
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| T |
2365 |
atgacacacccttttggcaactacttgattcaaaagattttt |
2406 |
T |
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