View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_22 (Length: 337)
Name: NF13237_low_22
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 24168649 - 24168954
Alignment:
| Q |
14 |
agacattatcgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacc |
113 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24168649 |
agacattaccgttaactccgaaaataacgtttggttccgtctctttacacccactgttggcggagaagtcgtcggagatggtggtgcaaccaaaacaacc |
24168748 |
T |
|
| Q |
114 |
tcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaa |
213 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
24168749 |
tcccttcccgttgtcattttcttccacggtggtggcttcacctatctttgcccctcctctatctactatgatgctttttgccgtagactctgccgggaaa |
24168848 |
T |
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| Q |
214 |
tgtctgttgttgttgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagctgttttgaaatatttggagga |
313 |
Q |
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| T |
24168849 |
tatccgttgttgttgtctctgtcaactaccgcctcacaccggagcattgctatccgtcgcaatacgaagacggagaagctgttttgaaatatttggagga |
24168948 |
T |
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| Q |
314 |
gaataa |
319 |
Q |
| |
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|||||| |
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| T |
24168949 |
gaataa |
24168954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 24188900 - 24189169
Alignment:
| Q |
23 |
cgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttccc |
122 |
Q |
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| T |
24188900 |
cgttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccaccaaaactacctcccttccc |
24188999 |
T |
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| Q |
123 |
gttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaatgtctgttg |
222 |
Q |
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| T |
24189000 |
gtcgtcattttcttccacggtggtggcttcacttttctttcttcttcctcaaacctctacgatgcggtttgtcgtagactctgccgggaaatctccgctg |
24189099 |
T |
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| Q |
223 |
ttgttgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagc |
292 |
Q |
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| T |
24189100 |
tcattgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagc |
24189169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 24179085 - 24179363
Alignment:
| Q |
14 |
agacattatcgttaactccgaaaataatgtttggttccgtctctttacacccactgttggtggagaagtcgtcggagatggtggtgcaaccaaaacaacc |
113 |
Q |
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|||| ||| ||||||| |||||||||| |||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||| |||||| ||||| |
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| T |
24179085 |
agacgttaccgttaacgccgaaaataacgtttggtttcgtctctttacccccactgttgccggagaagtcaccggagatggtggtgccaccaaagcaacc |
24179184 |
T |
|
| Q |
114 |
tcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatgctttttgtcgtagactctgctgggaaa |
213 |
Q |
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|||||||| || |||||||||||||| || || |||| ||| | ||||| || ||||| | | ||| || ||| |||| |||||||||||| |||||| |
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| T |
24179185 |
tcccttcctgtcgtcattttcttccacggcggtggctacacttttctttctccttcctcgaacctctacgacgctgtttgccgtagactctgccgggaaa |
24179284 |
T |
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| Q |
214 |
tgtctgttgttgttgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagc |
292 |
Q |
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| || | ||| ||||||| ||||||||||| || ||||| |||||| | ||||| || ||||| |||||||||||||| |
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| T |
24179285 |
tctccgctgtcattgtctccgtcaactaccgacttacaccagagcatcggtatccgtcacaatatgaagacggagaagc |
24179363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 87 - 319
Target Start/End: Original strand, 24151895 - 24152127
Alignment:
| Q |
87 |
ggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttccatggtggcggcttcacctatctttgcccctcctctatctactatgatg |
186 |
Q |
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|||||||||||||| || ||||||||||||||||| || |||||| |||||| ||||| ||||||| | ||||| ||||||||| ||||| | |||| |
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| T |
24151895 |
ggagatggtggtgccactaaaacaacctcccttcctgtcatcatttacttccacggtggtggcttcagttttctttccccctcctcaatctatcacgatg |
24151994 |
T |
|
| Q |
187 |
ctttttgtcgtagactctgctgggaaatgtctgttgttgttgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacgg |
286 |
Q |
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|||| || |||||||||||| ||||| | | | |||||| |||||||||||||||||||| |||||||||||| | ||||| |||||||| || || || |
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| T |
24151995 |
ctttatgccgtagactctgcagggaagttttcgctgttgtcgtctctgtcaactaccgccttacaccggagcatagatatccgtcgcaatatgatgatgg |
24152094 |
T |
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| Q |
287 |
agaagctgttttgaaatatttggaggagaataa |
319 |
Q |
| |
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||| ||||| |||||| |||||| |||||||| |
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| T |
24152095 |
agaggctgtgctgaaatttttggaagagaataa |
24152127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 24112741 - 24112839
Alignment:
| Q |
221 |
tgttgttgtctctgtcaactaccgcctcacaccggagcattgctatccatcgcaatacgaagacggagaagctgttttgaaatatttggaggagaataa |
319 |
Q |
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|||||| ||||| ||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24112741 |
tgttgtcgtctccgtcaactaccgtcacacaccggagcatcggtatccatcgcaatacgaagacggagaagctgttttgaaatatttggacgagaataa |
24112839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 24112531 - 24112584
Alignment:
| Q |
14 |
agacattatcgttaactccgaaaataatgtttggttccgtctctttacacccac |
67 |
Q |
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|||| ||||||||||| | ||| |||| ||||||||||||||||| |||||||| |
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| T |
24112531 |
agacgttatcgttaacgcagaagataacgtttggttccgtctcttcacacccac |
24112584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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