View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_24 (Length: 317)
Name: NF13237_low_24
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 8039183 - 8038986
Alignment:
| Q |
1 |
acactgaatcatcgactttgatattaatttnnnnnnntaattcattgaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgttg |
100 |
Q |
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| T |
8039183 |
acactgaatcatcgactttgatattaatttaagaaaataattcattgaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgttg |
8039084 |
T |
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| Q |
101 |
gatactacacccgcattcaatcaataatgtcagtgctaaagaatttccaatagatgatacatannnnnnnncccgaaagtcagcatatttattaacaa |
198 |
Q |
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| T |
8039083 |
gatactacacccgcattcaatcaataatgtcagtgctaaagaatttgcaatagatgatacatattttttttcccgaaagtcagcatatttataaacaa |
8038986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 8038923 - 8038825
Alignment:
| Q |
200 |
tagtttacgaagttcctttccatttcaaactcctctatgactctaagaagatatcagtcttataactcttaagccaaatacaaattaacaggctacact |
298 |
Q |
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| T |
8038923 |
tagtttacaaagttcctttccatttcaaactcctctatgactctaagaagatatcagtcttataactcttaagccaaatacaaattaacaggctacact |
8038825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 8414083 - 8414174
Alignment:
| Q |
47 |
gaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgttggatactacacccgcattcaatcaataatgtcagtgcta |
138 |
Q |
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| T |
8414083 |
gaatttaatcacatgtgtcagtggcatgttgttattagacatcgacacatgttggatactaaattggcattcaatcagaaatgtcagtgcta |
8414174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8033879 - 8033780
Alignment:
| Q |
1 |
acactgaatcatcgacttt--gatattaatttnnnnnnntaattcattgaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgt |
98 |
Q |
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|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||| |||||| ||| || |||||| |
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| T |
8033879 |
acactgaatcttcgactttttgatattaattttagaaaataattcattgaatttaatcaaatgtgtcagtggtgtgttggtattaggcattgagacatgt |
8033780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 8414270 - 8414318
Alignment:
| Q |
90 |
gacacatgttggatactacacccgcattcaatcaataatgtcagtgcta |
138 |
Q |
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| T |
8414270 |
gacacatgttggatactaaactggcattcaatcagaaatgtcagtgcta |
8414318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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