View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13237_low_28 (Length: 296)
Name: NF13237_low_28
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_28 |
 | |
|
| [»] scaffold0768 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0768 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 587 - 870
Alignment:
| Q |
1 |
tttgtcattggatttcatatc-acgttgattagaaaaattgtcacatcaccactttttaaatttaaaaatacgagggagagaccaaaaatctgaatttaa |
99 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
587 |
tttgtcattggatttcatgtctacgttgattaaaaaaattgtcacatcaccactttttaaatttaaaatgt----ggaaagaccaaaaatctgaatttaa |
682 |
T |
|
| Q |
100 |
aatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattggtccacattataggatatcaaaattgatacagaaaaaatcgaatatgataa |
199 |
Q |
| |
|
|| || ||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||| ||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
683 |
aagattggagactggttttatgagcgtggaaaaatgtaggttaaaattgatccacattatagaataccgaaattgatacaggaaaaatcgaatatgataa |
782 |
T |
|
| Q |
200 |
tttaagagaagtacattccaaaatctccaatcaataccattaaatcaacctaatcaagttgatgcccatattttgattatctgatgat |
287 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
783 |
tttaagaggagtacatttcaaaatttccaatcaataccatcaaatcaacccaattaagttgatgcccatattttaattatctaatgat |
870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 18235366 - 18235290
Alignment:
| Q |
72 |
gagggagagaccaaaaatctgaatttaaaatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattg |
148 |
Q |
| |
|
|||||| |||| ||| |||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
18235366 |
gagggaaagactaaatatctgaatttaaaagataggagaatagtgttatgagtacacaaaaatgtaggtcaaaattg |
18235290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University