View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13237_low_29 (Length: 293)
Name: NF13237_low_29
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 38550820 - 38550594
Alignment:
| Q |
20 |
ggtcccattaacatgaattatttaaaactattgtgaccaatacattttgtagctctatccaacgtaacaatgctctactattggtgatataaaggttagt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38550820 |
ggtcccattaacatgaattatttaaaactattgtgaccactacattttgtagctctatccaacgtaacaatgctctactattggtgatataaaggttagt |
38550721 |
T |
|
| Q |
120 |
tatatgacatgttagttaaactaatattggttatgagataaatgctacattgtttgatagtacattaatgtttatatagccaattaggcaaactagtcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38550720 |
tatatgacatgttagttaaactaatattggttatgagataaatgctacatcgtttgatagtacattaatgtttatatagccaattaggcaaactagtcct |
38550621 |
T |
|
| Q |
220 |
aatatcattagtatacagcgtgaaatg |
246 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38550620 |
aatatcattagtatacagcgtgaaatg |
38550594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University