View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_32 (Length: 278)
Name: NF13237_low_32
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 281579 - 281826
Alignment:
| Q |
6 |
aaaacttaatgcttcctgtttt-tcttttaaactaatttggttcctatactatctcttgattgatcgctgtgtagactgtgctcaatagagttaacacac |
104 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
281579 |
aaaacttaatgcttcctgttttttcttttaaactaatttggttcctatactatttcttgattgatcgctgtgtagactgtgctcaatagagttaacacac |
281678 |
T |
|
| Q |
105 |
tcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatgcacctctgactcctcgggtgatacgttacaggt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
281679 |
tcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatgcacctctgactccttgggtgatacgttacaggt |
281778 |
T |
|
| Q |
205 |
atatatgttttcaatattttttatttcagttcaaagagctttaaataa |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
281779 |
atatatgttttcaatattttttatttcagttcaaagagctttaaataa |
281826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 634273 - 634026
Alignment:
| Q |
6 |
aaaacttaatgcttcctgttttt-cttttaaactaatttggttcctatactatctcttgattgatcgctgtgtagactgtgctcaatagagttaacacac |
104 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
634273 |
aaaacttaatgcttcctgttttttcttttaaactaatttggttcctatactatttcttgattgatcgctgtgtagactgtgctcaatagagttaacacac |
634174 |
T |
|
| Q |
105 |
tcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatgcacctctgactcctcgggtgatacgttacaggt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
634173 |
tcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatgcacctctgactccttgggtgatacgttacaggt |
634074 |
T |
|
| Q |
205 |
atatatgttttcaatattttttatttcagttcaaagagctttaaataa |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
634073 |
atatatgttttcaatattttttatttcagttcaaagagctttaaataa |
634026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 820076 - 819829
Alignment:
| Q |
6 |
aaaacttaatgcttcctgttttt-cttttaaactaatttggttcctatactatctcttgattgatcgctgtgtagactgtgctcaatagagttaacacac |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
820076 |
aaaacttaatgcttcctgttttttcttttaaactaatttggttcctatactatttcttgattgatcgctgtgtagactgtgctcaatagagttaacacac |
819977 |
T |
|
| Q |
105 |
tcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatgcacctctgactcctcgggtgatacgttacaggt |
204 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
819976 |
tcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatgcacctctgactccttgggtgatacgttacaggt |
819877 |
T |
|
| Q |
205 |
atatatgttttcaatattttttatttcagttcaaagagctttaaataa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
819876 |
atatatgttttcaatattttttatttcagttcaaagagctttaaataa |
819829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 27498146 - 27498038
Alignment:
| Q |
72 |
ctgtgtagactgtgctcaatagagttaacacactcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatg |
171 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||| || |||||||||||| |||| |
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| T |
27498146 |
ctgtgtagactgtgctcaatagagttaacacattcacaaatatcacttataaggaagatcctaccatttttgcttgggaactcatgaatgagcctagatg |
27498047 |
T |
|
| Q |
172 |
cacctctga |
180 |
Q |
| |
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|| |||||| |
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| T |
27498046 |
caactctga |
27498038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 27519618 - 27519510
Alignment:
| Q |
72 |
ctgtgtagactgtgctcaatagagttaacacactcacaaatattacttataaggaagatccaacaatttttgcttgggagctaatgaatgagcctcgatg |
171 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||| || |||||||||||| |||| |
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| T |
27519618 |
ctgtgtagactgtgctcaatagagttaacacattcacaaatatcacttataaggaagatcctaccatttttgcttgggaactcatgaatgagcctagatg |
27519519 |
T |
|
| Q |
172 |
cacctctga |
180 |
Q |
| |
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|| |||||| |
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| T |
27519518 |
caactctga |
27519510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 38090200 - 38090154
Alignment:
| Q |
122 |
aaggaagatccaacaatttttgcttgggagctaatgaatgagcctcg |
168 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||| ||||| |
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| T |
38090200 |
aaggatgacccaacaatttttgcttgggagctaatgaatgaacctcg |
38090154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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