View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13237_low_36 (Length: 250)

Name: NF13237_low_36
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13237_low_36
NF13237_low_36
[»] chr1 (10 HSPs)
chr1 (15-250)||(901669-901904)
chr1 (60-250)||(923966-924153)
chr1 (108-250)||(909478-909620)
chr1 (106-250)||(915967-916102)
chr1 (110-243)||(960105-960244)
chr1 (23-81)||(901551-901609)
chr1 (110-243)||(949133-949272)
chr1 (15-81)||(901606-901672)
chr1 (200-243)||(942240-942283)
chr1 (200-243)||(971510-971553)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 901669 - 901904
Alignment:
Q  15 aattacatgatgatccaaatagatttttcatggtttatggcaaagatgatgcaagtgaaacacaatttctacatgacaatccaattgtggccttgttctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  901669 aattacatgatgatccaaatagatttttcatggtttatggcaaagatgatgcaagtgaaacacaatttctacatgacaatccaattgtggccttgttctt 901768  T
Q  115 cttagaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacctcaaattatggaataacatttttgcctcgtgaagttgctaattcc 214  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  901769 cttggaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacctcaaattatgaagtaacatttttgcctcgtgaagttgctaattcc 901868  T
Q  215 attcccttttcatcaaacaaagtggaaaaaatcctt 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  901869 attcccttttcatcaaacaaagtggaaaaaatcctt 901904  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 923966 - 924153
Alignment:
Q  60 atgatgcaagtgaaacacaatttctacatgacaatccaattgtggccttgttcttcttagaaaaagacttgcatcttggtacaaaattgaacatgcaatt 159  Q
    ||||||||||||| ||||||||   ||||||  ||| || | |||| ||||||||||| ||||| |||||||||  ||||||||||||||||||||||||    
T  923966 atgatgcaagtgatacacaatt---acatgattatcgaaatctggctttgttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaatt 924062  T
Q  160 caaaaagacctcaaattatggaataacatttttgcctcgtgaagttgctaattccattcccttttcatcaaacaaagtggaaaaaatcctt 250  Q
    || |||||||||| ||||||||  |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||    
T  924063 cacaaagacctcagattatggagcaacattcttgcctcgtgaagttgctaattccataccattttcatcaaacaaagtggaaaacatcctt 924153  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 909478 - 909620
Alignment:
Q  108 tgttcttcttagaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacctcaaattatggaataacatttttgcctcgtgaagttgc 207  Q
    ||||||| || ||||| |||||||||| |||||||||||| ||||| ||||||| |||||||||| |  |||||   ||||| |||||| |||| |||||    
T  909478 tgttcttattggaaaaggacttgcatcatggtacaaaattcaacatacaattcacaaagacctcagaccatggaccgacattcttgcctggtgacgttgc 909577  T
Q  208 taattccattcccttttcatcaaacaaagtggaaaaaatcctt 250  Q
     ||||||||||||||||||||||||||| ||||||| ||||||    
T  909578 gaattccattcccttttcatcaaacaaattggaaaacatcctt 909620  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 250
Target Start/End: Original strand, 915967 - 916102
Alignment:
Q  106 cttgttcttcttagaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacctcaaattatggaataacatttttgcctcgtgaagtt 205  Q
    |||||||||||| ||||| ||||||||   |||||||||||||||||||||||||| |||||||         |||  |||||| ||||||||||||||     
T  915967 cttgttcttctttgaaaaggacttgcacaatggtacaaaattgaacatgcaattcacaaagacc---------ggagcaacattcttgcctcgtgaagtc 916057  T
Q  206 gctaattccattcccttttcatcaaacaaagtggaaaaaatcctt 250  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||    
T  916058 gctaattccataccattttcatcaaacaaagtggaaaacatcctt 916102  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 960105 - 960244
Alignment:
Q  110 ttcttcttagaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacc---tcaaattat---ggaataacatttttgcctcgtgaag 203  Q
    ||||||||  ||||||| ||||||| ||| |||||||||||| ||||||||||| ||||    |||||| ||   |||| || ||| |||||| | ||||    
T  960105 ttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattcaaagagacaacttcaaataataatggaacaaaattcttgcctagagaag 960204  T
Q  204 ttgctaattccattcccttttcatcaaacaaagtggaaaa 243  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  960205 ttgctaattccatacccttttcatcaaacaaaatggaaaa 960244  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 901551 - 901609
Alignment:
Q  23 gatgatccaaatagatttttcatggtttatggcaaagatgatgcaagtgaaacacaatt 81  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  901551 gatgatccaaatagatattttatggtttatggcaaagatgctgcaagtgaaacacaatt 901609  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 949133 - 949272
Alignment:
Q  110 ttcttcttagaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacc---tcaaattat---ggaataacatttttgcctcgtgaag 203  Q
    ||||||||  ||||||| ||||||| ||| |||||||||||| |||||||| || ||||    |||||| ||   |||| || ||| |||||| | ||||    
T  949133 ttcttcttgaaaaaagatttgcatcatggaacaaaattgaacttgcaattccaagagacaacttcaaataataatggaacaaaattcttgcctagagaag 949232  T
Q  204 ttgctaattccattcccttttcatcaaacaaagtggaaaa 243  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  949233 ttgctaattccatacccttttcatcaaacaaattggaaaa 949272  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 901606 - 901672
Alignment:
Q  15 aattacatgatgatccaaatagatttttcatggtttatggcaaagatgatgcaagtgaaacacaatt 81  Q
    ||||||||| ||| |||||||||||||| ||||||||||| ||||||| ||||||| ||| ||||||    
T  901606 aattacatggtgacccaaatagattttttatggtttatggtaaagatgctgcaagtaaaaaacaatt 901672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 942240 - 942283
Alignment:
Q  200 gaagttgctaattccattcccttttcatcaaacaaagtggaaaa 243  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  942240 gaagttgctaattccatacccttttcatcaaacaaaatggaaaa 942283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 971510 - 971553
Alignment:
Q  200 gaagttgctaattccattcccttttcatcaaacaaagtggaaaa 243  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  971510 gaagttgctaattccatacccttttcatcaaacaaaatggaaaa 971553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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