View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13237_low_38 (Length: 239)

Name: NF13237_low_38
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13237_low_38
NF13237_low_38
[»] chr3 (9 HSPs)
chr3 (22-223)||(36005984-36006186)
chr3 (22-223)||(53521176-53521378)
chr3 (22-131)||(9372667-9372776)
chr3 (116-219)||(53521607-53521710)
chr3 (116-163)||(9373059-9373106)
chr3 (116-163)||(9373699-9373746)
chr3 (126-163)||(9373383-9373420)
chr3 (177-223)||(9372997-9373043)
chr3 (178-223)||(9373636-9373681)
[»] chr4 (6 HSPs)
chr4 (22-223)||(8120844-8121044)
chr4 (22-223)||(26602851-26603050)
chr4 (116-223)||(26602523-26602631)
chr4 (116-163)||(26603331-26603378)
chr4 (176-219)||(8120576-8120619)
chr4 (178-208)||(26603288-26603318)
[»] chr1 (3 HSPs)
chr1 (41-223)||(21056608-21056792)
chr1 (115-223)||(8256646-8256753)
chr1 (116-163)||(21056273-21056320)
[»] chr5 (3 HSPs)
chr5 (22-142)||(38936498-38936618)
chr5 (177-223)||(38936425-38936471)
chr5 (116-163)||(38937284-38937332)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 36005984 - 36006186
Alignment:
Q  22 ttagtttctaatttttggttttgatgaaacatatgacccttannnnnnnncattttgaatattcaagcacctattttagaacttaaaaacaaaattataa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36005984 ttagtttctaatttttggttttgatgaaacatatgacccttattctttttcattttgaatattcaagcacctattttagaacttaaaaacaaaattataa 36006083  T
Q  122 gattagtcctaatctctcctattttttctacttatgaaaatgtaa-tcnnnnnnnggaaaggactaaacagaacttaaataagacatgcattttcttctg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||| ||| ||    
T  36006084 gattagtcctaatctctcctattttttctacttatgaaaatgtaattttttttttggaaaggactaaacagaacttaaataagacatgcatttccttatg 36006183  T
Q  221 atg 223  Q
    |||    
T  36006184 atg 36006186  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 53521378 - 53521176
Alignment:
Q  22 ttagtttctaatttttggttttgatgaaacatatgacccttannnnnnnncattttgaatattcaagcacctattttagaacttaaaaacaaaattataa 121  Q
    ||||||| ||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53521378 ttagtttttaatttttggttttgatgaaacatatggcccttattctttttcattttgaatattcaagcacctattttagaacttaaaaacagaattataa 53521279  T
Q  122 gattagtcctaatctctcctattttttctacttatgaaaatgt-aatcnnnnnnnggaaaggactaaacagaacttaaataagacatgcattttcttctg 220  Q
    |||||||||||||||||| |||||||||||||||||||||||| | |        |||||||||||||||||||||||||||||| ||  ||| ||||||    
T  53521278 gattagtcctaatctctcatattttttctacttatgaaaatgtcattttttttttggaaaggactaaacagaacttaaataagacctgtgtttccttctg 53521179  T
Q  221 atg 223  Q
    |||    
T  53521178 atg 53521176  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 9372776 - 9372667
Alignment:
Q  22 ttagtttctaatttttggttttgatgaaacatatgacccttannnnnnnncattttgaatattcaagcacctattttagaacttaaaaacaaaattataa 121  Q
    ||||||| ||||||||||||| |||||||||| || ||||||         || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  9372776 ttagtttttaatttttggtttagatgaaacatgtggcccttattctttttgatattgaatattcaagcacctattttagaacttaaaaacagaattataa 9372677  T
Q  122 gattagtcct 131  Q
    ||||||||||    
T  9372676 gattagtcct 9372667  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 53521710 - 53521607
Alignment:
Q  116 ttataagattagtcctaatctctcctattttttctacttatgaaaatgtaatcnnnnnnnggaaaggactaaacagaacttaaataagacatgcattttc 215  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||||   |        |||||||||||||||||||||||||||||| ||||||| |    
T  53521710 ttataggattagtcctcatctctcatattttttctacttatgaaaatgacttttttttttggaaaggactaaacagaacttaaataagacctgcatttcc 53521611  T
Q  216 ttct 219  Q
    ||||    
T  53521610 ttct 53521607  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 9373106 - 9373059
Alignment:
Q  116 ttataagattagtcctaatctctcctattttttctacttatgaaaatg 163  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||    
T  9373106 ttataggactagtcctaatctctcctattttttctacttatgaaaatg 9373059  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 9373746 - 9373699
Alignment:
Q  116 ttataagattagtcctaatctctcctattttttctacttatgaaaatg 163  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  9373746 ttataggatcagtcctaatctctcctattttttctacttatgaaaatg 9373699  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 9373420 - 9373383
Alignment:
Q  126 agtcctaatctctcctattttttctacttatgaaaatg 163  Q
    |||||||||||||||||||||||||| |||||||||||    
T  9373420 agtcctaatctctcctattttttctaattatgaaaatg 9373383  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 9373043 - 9372997
Alignment:
Q  177 gaaaggactaaacagaacttaaataagacatgcattttcttctgatg 223  Q
    |||||||||||||| |||||||||||||| ||| ||| |||||||||    
T  9373043 gaaaggactaaacaaaacttaaataagacttgcgtttccttctgatg 9372997  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 9373681 - 9373636
Alignment:
Q  178 aaaggactaaacagaacttaaataagacatgcattttcttctgatg 223  Q
    ||||||||||||||||| |||||||||||||  ||| |||||||||    
T  9373681 aaaggactaaacagaacataaataagacatgtgtttccttctgatg 9373636  T

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Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 8120844 - 8121044
Alignment:
Q  22 ttagtttctaatttttggttttgatgaaacatatgacccttannnnnnnncattttgaatattcaagcacctattttagaacttaaaaacaaaattataa 121  Q
    ||||||| ||||||||||||||||||||||||||| ||||||        |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  8120844 ttagtttttaatttttggttttgatgaaacatatggcccttattctttttcattttgaatatacaagcacctattttagaacttaaaaacataattataa 8120943  T
Q  122 gattagtcctaatctctcctattttttctacttatgaaaatgtaatcnnnnnnnggaaaggactaaacagaacttaaataagacatgcattttcttctga 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||| ||  ||| |||||||    
T  8120944 gattagtcctaatctttcctattttttctacttatgaaaatgtcat-tttttttggaaaggactaaacagaacttaaataagacttgtgtttccttctga 8121042  T
Q  222 tg 223  Q
    ||    
T  8121043 tg 8121044  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 26603050 - 26602851
Alignment:
Q  22 ttagtttctaatttttggttttgatgaaacatatgacccttannnnnnnncattttgaatattcaagcacctattttagaacttaaaaacaaaattataa 121  Q
    ||||||| ||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  26603050 ttagtttttaatttttggttttgatgaaacatatggcccttattctttttcattttgaatattcaagcacctattttataacttaaaaatagaattataa 26602951  T
Q  122 gattagtcctaatctctcctattttttctacttatgaaaatgtaatcnnnnnnnggaaaggactaaacagaacttaaataagacatgcattttcttctga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||          |||||| ||||||||||||||||||||||||| ||| |||||||    
T  26602950 gattagtcctaatctctcctattttttctacttatgaaaatgtcattcttttta--aaaggattaaacagaacttaaataagacatgcgtttccttctga 26602853  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 26602631 - 26602523
Alignment:
Q  116 ttataagattagtcctaatctctcctattttttctacttatgaaaatg-taatcnnnnnnnggaaaggactaaacagaacttaaataagacatgcatttt 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    |        |||||||||||||||||||||||||||||| ||| |||     
T  26602631 ttataggattagtcctaatctctcctattttttctacttatgaaaatgactttttttttttggaaaggactaaacagaacttaaataagacttgcgtttc 26602532  T
Q  215 cttctgatg 223  Q
    |||||||||    
T  26602531 cttctgatg 26602523  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 26603378 - 26603331
Alignment:
Q  116 ttataagattagtcctaatctctcctattttttctacttatgaaaatg 163  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  26603378 ttataggattagtcctcatctctcctattttttctacttatgaaaatg 26603331  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 8120576 - 8120619
Alignment:
Q  176 ggaaaggactaaacagaacttaaataagacatgcattttcttct 219  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  8120576 ggaaaggactaaacagaacttaaataagacatgcgtttccttct 8120619  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Complemental strand, 26603318 - 26603288
Alignment:
Q  178 aaaggactaaacagaacttaaataagacatg 208  Q
    |||||||||||||||||||||||||||||||    
T  26603318 aaaggactaaacagaacttaaataagacatg 26603288  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 21056608 - 21056792
Alignment:
Q  41 tttgatgaaacatatgacccttannnnnnnncattttgaatattcaagcacctattttagaacttaaaaacaaaattataagattagtcctaatctctcc 140  Q
    |||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21056608 tttgatgaaacatatggcccttattctttttcattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctcc 21056707  T
Q  141 tattttttctacttatgaaaatg--taatcnnnnnnnggaaaggactaaacagaacttaaataagacatgcattttcttctgatg 223  Q
    |||||||||||| ||| ||||||  |  |        ||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  21056708 tattttttctacatataaaaatgtcttttttttttttggaaaggactaaacataacttaaataagacctgcatttccttctgatg 21056792  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 8256646 - 8256753
Alignment:
Q  115 attataagattagtcctaatctctcctattttttctacttatgaaaatgtaatcnnnnnnnggaaaggactaaacagaacttaaataagacatgcatttt 214  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| | |        ||||||||| ||||| |||||||||||||| ||| |||     
T  8256646 attataggattagtcctcatctctcctattttttctacttatgaaaatg-attttttttttggaaaggacaaaacaaaacttaaataagacctgcgtttc 8256744  T
Q  215 cttctgatg 223  Q
    |||||||||    
T  8256745 cttctgatg 8256753  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 21056273 - 21056320
Alignment:
Q  116 ttataagattagtcctaatctctcctattttttctacttatgaaaatg 163  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  21056273 ttataggattagtcctcatctctcctattttttctacttatgaaaatg 21056320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 38936618 - 38936498
Alignment:
Q  22 ttagtttctaatttttggttttgatgaaacatatgacccttannnnnnnncattttgaatattcaagcacctattttagaacttaaaaacaaaattataa 121  Q
    ||||||| |||| |||| ||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38936618 ttagtttttaatatttgattttgatgaaacatatggcccttattctttttcattttgaatattcaagcacctattttagaacttaaaaacagaattataa 38936519  T
Q  122 gattagtcctaatctctccta 142  Q
    |||||||||||||||||||||    
T  38936518 gattagtcctaatctctccta 38936498  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 38936471 - 38936425
Alignment:
Q  177 gaaaggactaaacagaacttaaataagacatgcattttcttctgatg 223  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  38936471 gaaaggattaaacagaacttaaataagacatgcgtttccttctgatg 38936425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 38937332 - 38937284
Alignment:
Q  116 ttataagattagtcctaatctctcctatttttt-ctacttatgaaaatg 163  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||    
T  38937332 ttataggactagtcctcatctctcctatttttttctacttatgaaaatg 38937284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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