View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_41 (Length: 230)
Name: NF13237_low_41
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 30809033 - 30809191
Alignment:
| Q |
1 |
actgtcatagttgatactactagtaaacatcttacatggttttgaagggtcattagaacacaaacttttcttgtactcatcaggcatatgaaacacctcc |
100 |
Q |
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| T |
30809033 |
actgtcatagttgatactactagtaaacatcttacatggttttgaagggtcattagaacacaaacttttcttgtactcatcaggcatatgaaacacctcc |
30809132 |
T |
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| Q |
101 |
ttgaaaacattcattgtttctttcatttgattctccgggactccgtgattgataatctg |
159 |
Q |
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| T |
30809133 |
ttaaaaacattcattgtttctttcatttgattcactgggactccatgattgataatctg |
30809191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 30801568 - 30801693
Alignment:
| Q |
6 |
catagttgatactactagtaaacatcttacatggttttgaagggtcattagaacacaaacttttcttgtactcatcaggcatatgaaacacctccttgaa |
105 |
Q |
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| T |
30801568 |
catagttgaaactgctagtaaacatcttgcatggcttggaagggtcattagtacacaagtttttcttgtactcatcaggcatatgaaaaatctccttaaa |
30801667 |
T |
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| Q |
106 |
aacattcattgtttctttcatttgat |
131 |
Q |
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| T |
30801668 |
aatactcattgtttccttcatttgat |
30801693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 30784175 - 30784272
Alignment:
| Q |
70 |
cttgtactcatcaggcatatgaaacacctccttgaaaacattcattgtttctttcatttgattctccgggactccgtgattgataatctgcttcaatc |
167 |
Q |
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| T |
30784175 |
cttgtactcattaggcatctcaaacacctccttgaaaacactcattgtttctttcatttgattcattgagattccatgattgataacctacttcaatc |
30784272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 30741781 - 30741849
Alignment:
| Q |
66 |
ttttcttgtactcatcaggcatatgaaacacctccttgaaaacattcattgtttctttcatttgattct |
134 |
Q |
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| T |
30741781 |
ttttcttgtattcataacgcatctcaaacacctccttgaaaatactcattgtttccttcatttcattct |
30741849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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