View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_42 (Length: 219)
Name: NF13237_low_42
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 30930898 - 30930834
Alignment:
| Q |
141 |
agagggataaatgtcaaatgtatatagaaaattacacatgaatagaagacaaacgagtaataagt |
205 |
Q |
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| T |
30930898 |
agagggataaatgtctaatgtatatagaaaattacacatgaatagaagacaaacgagtaataagt |
30930834 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 30931035 - 30930985
Alignment:
| Q |
5 |
agcaacggatgccactgattataaacatgtggtatgcaatcacagaaactc |
55 |
Q |
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| T |
30931035 |
agcaacggatgccactgaatataaacatgtggtatgcaatcatagaaactc |
30930985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 30919542 - 30919498
Alignment:
| Q |
11 |
ggatgccactgattataaacatgtggtatgcaatcacagaaactc |
55 |
Q |
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| T |
30919542 |
ggataccactaaatataaacatgtggtatgcaatcacagaaactc |
30919498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 30919442 - 30919395
Alignment:
| Q |
141 |
agagggataaatgtcaaatgtatatagaaaattacacatgaatagaag |
188 |
Q |
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| T |
30919442 |
agagggataaatgtcaaatatatatagaaaattataaatgaatggaag |
30919395 |
T |
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