View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13237_low_9 (Length: 515)
Name: NF13237_low_9
Description: NF13237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13237_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 12453905 - 12454394
Alignment:
| Q |
11 |
ataataaaaatggctacagcctcagcaacaactccatctacaatcactgttgtaggaagctcagttattggaaccaaatcaaggagtactaagaagggta |
110 |
Q |
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| T |
12453905 |
ataataacaatggctacagcctcagcaacaactccatctacaatcactgttgtaggaagctcagttattggaaccaaatcaaggagtactaagaagggta |
12454004 |
T |
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| Q |
111 |
acaatgtgaagtttatcacaggactgaattcatacaatggattgaaagcacagaacagcactgtgacatcactaggagttcctatgtgcactgaacaagc |
210 |
Q |
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| T |
12454005 |
acaatgtcaagtttatcacaggactgaattcatacaatggattgaaagcacagaacagcactgtgacatcactaggagttcctatgtgcactgaacaagc |
12454104 |
T |
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| Q |
211 |
ttttgcaaaagtgacgagttcattgaaatatccatcaaatggaggaagaagaggaggtgcaggttcttcaacatgtaatgctgcaggtgagatttttcag |
310 |
Q |
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| T |
12454105 |
ttttgcaaaagtgatgagttcattgaaatatccatcaaatggaggaagaagaggaggtgcaggttcttcaacatgtaatgctgcaggtgagatttttcag |
12454204 |
T |
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| Q |
311 |
attgcagctattatgaatggacttactcttgttggtgttgctgttggatttgttcttcttcgaattgaagctgctgttgaagaagctgagtaagaatttt |
410 |
Q |
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| T |
12454205 |
attgcagctattatgaatggacttactcttgttggtgttgctgttggatttgttcttcttcgaattgaagctgctgttgaagaagctgagtaagaatttt |
12454304 |
T |
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| Q |
411 |
tcatatatatttgtaataatgtaatgtaagtttatatcaggaagnnnnnnnntacaatttgtatgttatgtttgattcttgatgtgatgatgt |
503 |
Q |
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| T |
12454305 |
tcatatatatttgtaataatgtaatgtaagtttatatcaggaag---aaaaatacaatttgtatgttatgtttgattcttgatgtgatgatgt |
12454394 |
T |
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