View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_high_10 (Length: 468)
Name: NF13238_high_10
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 40884255 - 40883815
Alignment:
| Q |
18 |
gtgtatgctagtcattacatactgcaggtttctttctgtgtttgtaccttattcagtgcagtcataaaattatttcctattttcaaaacttttttgtttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40884255 |
gtgtatgctagtcattacatactgcaggtttctttctgtgtttgtaccttattcagtgcagtcataaaattatttcctattttcaaaacttttt-gtttc |
40884157 |
T |
|
| Q |
118 |
attgattccattaggtacccagctgatgtttctaggagggctagaattcaagcagtgttagattggcatcacctgaatttgcgccgtggagcaggtgcgt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884156 |
attgattccattaggtacccagctgatgtttccaggagagctagaattcaagcagtgttagattggcatcacctgaatttgcgccgtggagcaggtgcgt |
40884057 |
T |
|
| Q |
218 |
tatactgcagaaacaaccctctgtttattttctttcagtgatcaaattttaatatagtcttctttcactaattagagattaatttctggcctggatagct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884056 |
tatactgcagaaacaaccctctgtttattttctttcagtgatcaaattttaatatagtcttctttcactaattagagattaatttctggcctggatagct |
40883957 |
T |
|
| Q |
318 |
ttaaattctcgtgcttatatattatttatcaagttagctaaaaaatcatggctgagctacgaagcttcatagaatatgctcacatagcaggtgactgcgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40883956 |
ttaaattctcgtgcttatatattatttatcaagttagctaaaaaatcatggctgagctacgaagcttcatagaatatgctcacatagcaggtgactgcat |
40883857 |
T |
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| Q |
418 |
aaagttggttaagcatttctttgagcgcatttatgatgatgt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40883856 |
aaagttggttaagcatttctttgagcgcatttatgatgatgt |
40883815 |
T |
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