View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_high_14 (Length: 351)

Name: NF13238_high_14
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_high_14
NF13238_high_14
[»] chr2 (7 HSPs)
chr2 (1-333)||(18234377-18234713)
chr2 (12-84)||(18232734-18232806)
chr2 (152-210)||(11513978-11514036)
chr2 (155-201)||(13866969-13867015)
chr2 (152-197)||(14302917-14302962)
chr2 (154-198)||(33931502-33931546)
chr2 (154-198)||(41170704-41170748)
[»] chr8 (16 HSPs)
chr8 (87-211)||(31875454-31875584)
chr8 (217-320)||(31876147-31876251)
chr8 (248-308)||(31562183-31562243)
chr8 (12-85)||(31553763-31553836)
chr8 (248-307)||(31551116-31551175)
chr8 (154-210)||(16162842-16162898)
chr8 (19-85)||(31564151-31564217)
chr8 (154-207)||(9700086-9700139)
chr8 (154-210)||(1664451-1664507)
chr8 (153-209)||(31915224-31915280)
chr8 (157-211)||(6496826-6496880)
chr8 (153-206)||(1561363-1561416)
chr8 (154-207)||(7714327-7714380)
chr8 (154-210)||(1889067-1889123)
chr8 (154-210)||(7918713-7918769)
chr8 (154-190)||(22705044-22705080)
[»] chr7 (5 HSPs)
chr7 (154-211)||(20547322-20547379)
chr7 (154-199)||(1710822-1710867)
chr7 (154-210)||(33894709-33894765)
chr7 (153-198)||(8427107-8427152)
chr7 (158-210)||(25670522-25670574)
[»] chr3 (6 HSPs)
chr3 (154-210)||(44014730-44014786)
chr3 (154-211)||(22667484-22667541)
chr3 (154-211)||(22724123-22724180)
chr3 (156-211)||(11041160-11041215)
chr3 (153-210)||(20210859-20210916)
chr3 (154-210)||(50211817-50211873)
[»] chr5 (10 HSPs)
chr5 (154-209)||(4855778-4855833)
chr5 (154-198)||(444016-444060)
chr5 (154-210)||(12407662-12407718)
chr5 (154-194)||(36796639-36796679)
chr5 (147-198)||(7907976-7908027)
chr5 (152-210)||(11684482-11684540)
chr5 (157-198)||(4855865-4855906)
chr5 (152-201)||(11095425-11095474)
chr5 (154-187)||(11615586-11615619)
chr5 (156-208)||(19627568-19627620)
[»] chr4 (7 HSPs)
chr4 (155-210)||(18628486-18628541)
chr4 (154-210)||(46860000-46860056)
chr4 (147-211)||(47970377-47970441)
chr4 (154-211)||(9316606-9316663)
chr4 (154-198)||(1017122-1017166)
chr4 (154-210)||(4071960-4072016)
chr4 (153-193)||(11802633-11802673)
[»] chr6 (6 HSPs)
chr6 (157-198)||(2727818-2727859)
chr6 (153-209)||(8420128-8420184)
chr6 (147-210)||(34429639-34429702)
chr6 (152-210)||(27857440-27857498)
chr6 (154-211)||(30865564-30865621)
chr6 (154-198)||(35070399-35070443)
[»] scaffold0199 (1 HSPs)
scaffold0199 (154-210)||(6892-6948)
[»] chr1 (5 HSPs)
chr1 (154-198)||(10199340-10199384)
chr1 (157-211)||(28467244-28467298)
chr1 (154-211)||(33723314-33723371)
chr1 (155-211)||(38867766-38867820)
chr1 (154-210)||(34536240-34536296)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 18234713 - 18234377
Alignment:
Q  1 ccaatatacataaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctccttaaagaagtgcagg 100  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18234713 ccaatatagaaaaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccattcctccttaaagaagtgcagg 18234614  T
Q  101 aagaatgtagagacttcgatttgctaatt----gatctttgtttttgtttaatttgtttatttgagcttatctaataacataaacacttgtgacactgtt 196  Q
    ||| |||||||||||| ||| | | ||||    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  18234613 aaggatgtagagactttgatctacgaattggtcgatctttgttcttgtttaatttgtttatttgagcttatctaataacataaacacttgtgacgttgtt 18234514  T
Q  197 tgagaaagcttatggttagttactaatcaaggataatgcaaattcataaaccatttgcacaaagattaacattcaacgccacttctgtttcaccatattt 296  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  18234513 tgagaaagcttatggttagttactaatcaagggtaatgcaaattcataaaccatttgcacaaagactaacattcaacaccacttctgtttcaccatattt 18234414  T
Q  297 gagtagttttgtatggttagttaccaaatgaatgatg 333  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18234413 gagtagttttgtatggttagttactaaatgaatgatg 18234377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 18232806 - 18232734
Alignment:
Q  12 aaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctc 84  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||| |||||    
T  18232806 aaatatcttgataatcacatagatgttctcagatttcgcagtgtatgtgaatcatttcgttcttccattcctc 18232734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 11514036 - 11513978
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||| ||||||| || ||||| ||||||||| ||||||| ||| ||||||||    
T  11514036 gtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttatg 11513978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 13867015 - 13866969
Alignment:
Q  155 tatttgagcttatctaataacataaacacttgtgacactgtttgaga 201  Q
    |||||||||||||||| |  ||||||||||||||| |||||||||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgaga 13866969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 14302962 - 14302917
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgttt 197  Q
    ||||||||||||||||||| || |||||||| |||||| |||||||    
T  14302962 gtttatttgagcttatctattagcataaacatttgtgagactgttt 14302917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 33931502 - 33931546
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||| |||||| ||||| |||||||||| |||||||    
T  33931502 ttatttgagcttacctaatagcataagcacttgtgactctgtttg 33931546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 41170748 - 41170704
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||| ||||||| |||||||||||||||||| ||| ||||    
T  41170748 ttatttgagtttatctactaacataaacacttgtgagactatttg 41170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 31875454 - 31875584
Alignment:
Q  87 taaagaagtgcaggaagaatgtagagacttcgatttgctaattgatctttgtttttgtttaatttgtttatttgagcttat------ctaataacataaa 180  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||      ||| || ||||||    
T  31875454 taaagaagtgcaggaaggatttagagacttcgattcgctaattgatctttgttcttgtttaatttgtttatttgagcttatctacgactactagcataaa 31875553  T
Q  181 cacttgtgacactgtttgagaaagcttatgg 211  Q
    |||| ||||||||||||||||||||||||||    
T  31875554 cactagtgacactgtttgagaaagcttatgg 31875584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 31876147 - 31876251
Alignment:
Q  217 tactaatcaa-ggataatgcaaattcataaaccatttgcacaaagattaacattcaacgccacttctgtttcaccatatttgagtagttttgtatggtta 315  Q
    |||||||||| || ||||||| | ||| ||| ||||| || ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31876147 tactaatcaaagggtaatgcagactcagaaatcatttccataaatactaacattcaacaccacttctgtttcaccatatttgagtagttttgtatggtta 31876246  T
Q  316 gttac 320  Q
    |||||    
T  31876247 gttac 31876251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 31562243 - 31562183
Alignment:
Q  248 catttgcacaaagattaacattcaacgccacttctgtttcaccatatttgagtagttttgt 308  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31562243 catttgcactaagattaacattcaacaccacttctgtttgaccatatttgagtagttttgt 31562183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 31553836 - 31553763
Alignment:
Q  12 aaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctcc 85  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| || ||||||||| ||||||||| ||||||    
T  31553836 aaatatcttgataatcacatagatgttctcagatttcgcagtgtctgcgaatcatttcgttcttccattcctcc 31553763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31551175 - 31551116
Alignment:
Q  248 catttgcacaaagattaacattcaacgccacttctgtttcaccatatttgagtagttttg 307  Q
    |||||||||||||||||||||||||| ||| ||  |||||||| ||||||||||||||||    
T  31551175 catttgcacaaagattaacattcaacaccaattaggtttcaccttatttgagtagttttg 31551116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 16162898 - 16162842
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||||||    
T  16162898 ttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatg 16162842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 31564217 - 31564151
Alignment:
Q  19 ttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctcc 85  Q
    ||||||||||||||||| |||||| |||||  ||||| || ||||||||| ||||||||| ||||||    
T  31564217 ttgataatcacatagatattctcagatttcggagtgtatgcgaatcatttcgttcttccattcctcc 31564151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 9700139 - 9700086
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagctt 207  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||||||| |||||    
T  9700139 ttatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 1664507 - 1664451
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| |||||||| || ||||||||    
T  1664507 ttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatg 1664451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 31915224 - 31915280
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttat 209  Q
    |||| ||||| ||||||| | ||||||| |||||||| |||||||||||||||||||    
T  31915224 tttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttat 31915280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 6496826 - 6496880
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||| ||||||| |||||||| ||||||||  |||||||| ||||||||||||    
T  6496826 tttgagtttatctactaacataatcacttgtgtgactgtttgggaaagcttatgg 6496880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 1561416 - 1561363
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagct 206  Q
    ||||||||| ||||||||||  ||||||||||||||| | ||||||||| ||||    
T  1561416 tttatttgatcttatctaatggcataaacacttgtgagattgtttgagagagct 1561363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 7714380 - 7714327
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagctt 207  Q
    |||||||||||||| ||||  ||||||||||||||| ||||||||  |||||||    
T  7714380 ttatttgagcttatataatgtcataaacacttgtgagactgtttggaaaagctt 7714327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 1889067 - 1889123
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| |  ||||||||||| ||| |||||||| |||||||||||    
T  1889067 ttatttgagtttatctactggcataaacacttttgagactgtttgggaaagcttatg 1889123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 7918713 - 7918769
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||| | |||||||| || ||||||||||||||| |||||||| || ||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatg 7918769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 22705044 - 22705080
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgac 190  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  22705044 ttatttgagcttacctattaacataaacacttgtgac 22705080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 20547322 - 20547379
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||| || ||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  20547322 ttattttagtttatctaatgacataaacacttgtgatactgtttgagagagcttatgg 20547379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 1710867 - 1710822
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttga 199  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||    
T  1710867 ttatttgagcttatctactaacataatcccttgtgacactgtttga 1710822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 33894765 - 33894709
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||||||| ||| |||||| ||||||||| |||||||| || ||||||||    
T  33894765 ttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatg 33894709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 8427152 - 8427107
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||||||||||||||||| ||||||||  |||||||| ||||||||    
T  8427152 tttatttgagcttatctactaacataagtacttgtgagactgtttg 8427107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 25670522 - 25670574
Alignment:
Q  158 ttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||||| | |||||| | ||||||| ||||||||||||| ||||||    
T  25670522 ttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatg 25670574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 44014730 - 44014786
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||||||    
T  44014730 ttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatg 44014786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 22667541 - 22667484
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||||| || ||||||    
T  22667541 ttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatgg 22667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 22724180 - 22724123
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||||| || ||||||    
T  22724180 ttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatgg 22724123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 11041160 - 11041215
Alignment:
Q  156 atttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||| ||| |||| ||||||||  ||||||||||| |||||||||    
T  11041160 atttgagcttatctactaagataagcacttgtgggactgtttgagagagcttatgg 11041215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 20210859 - 20210916
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||||| ||||||| | |||||| ||||||||| ||||||||||| | ||||||    
T  20210859 tttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatg 20210916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 50211873 - 50211817
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||| |||||||||| |||||||| ||||||| | ||||||||||| | ||||||    
T  50211873 ttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatg 50211817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 4855833 - 4855778
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttat 209  Q
    |||||||||||||| |||| || ||||||||||||| ||||||||||| |||||||    
T  4855833 ttatttgagcttatataatgacttaaacacttgtgagactgtttgagagagcttat 4855778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 444060 - 444016
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||    
T  444060 ttatttgagcttatctaattgcataaacacttgtgagactgtttg 444016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 12407662 - 12407718
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||| |||||||| | |||||||||||||||| || |||||||| ||||||||    
T  12407662 ttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttatg 12407718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 36796639 - 36796679
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactg 194  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  36796639 ttatttgagcttatctaatgacataaacacttgtgagactg 36796679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 7908027 - 7907976
Alignment:
Q  147 aatttgtttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||| ||||||||    
T  7908027 aattggttcatttgagtttatctaataacataaacacttatgagactgtttg 7907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 11684540 - 11684482
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||||||||||| |  ||| | ||||||||| ||||||| ||||||||||||    
T  11684540 gtttatttgagcttatctactgtcatgagcacttgtgagactgtttaagaaagcttatg 11684482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 4855906 - 4855865
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||||||||||||||| || ||||||||||||| ||||||||    
T  4855906 tttgagcttatctaatgacttaaacacttgtgagactgtttg 4855865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 11095425 - 11095474
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgaga 201  Q
    |||||||| |||||||||| | |||||||||||||||| | |||||||||    
T  11095425 gtttatttaagcttatctactgacataaacacttgtgatattgtttgaga 11095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 11615586 - 11615619
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgt 187  Q
    ||||||||||||||||| ||||||||||||||||    
T  11615586 ttatttgagcttatctactaacataaacacttgt 11615619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 19627568 - 19627620
Alignment:
Q  156 atttgagcttatctaataacataaacacttgtgacactgtttgagaaagctta 208  Q
    |||||| | |||||| ||| |||||||||||||| |||||||| |||||||||    
T  19627568 atttgaacctatctactaatataaacacttgtgatactgtttgtgaaagctta 19627620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 18628486 - 18628541
Alignment:
Q  155 tatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||||||||||| | |||||||||||||||| |||||||| || ||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatg 18628541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 46860056 - 46860000
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||| |||||||| | |||||| ||||||||| ||||||||||| ||||||||    
T  46860056 ttatttgaacttatctattcacataagcacttgtgaaactgtttgagagagcttatg 46860000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 47970441 - 47970377
Alignment:
Q  147 aatttgtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||| ||||||||||||||||||| | |||||| ||||||||| ||||||   ||||||||||||    
T  47970441 aattggtttatttgagcttatctactgacataagcacttgtgaaactgttatggaaagcttatgg 47970377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 9316663 - 9316606
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||| ||| | | |||||||||||||||| |||||||| || |||||||||    
T  9316663 ttatttgagctcatccatttacataaacacttgtgaaactgtttgggagagcttatgg 9316606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 1017166 - 1017122
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||| ||||| | |||||||||||||||| ||||||||    
T  1017166 ttatttgagctaatctactgacataaacacttgtgagactgtttg 1017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 4072016 - 4071960
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||| ||| ||| |||| ||||||||| ||||||||||| ||||||||    
T  4072016 ttatttgaggttaactattaatataagcacttgtgagactgtttgagagagcttatg 4071960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 11802673 - 11802633
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacact 193  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  11802673 tttatttgagcttttctaccaacataaacacttgtgacact 11802633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 2727818 - 2727859
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  2727818 tttgagcttatctaatcgcataaacacttgtgacactgtttg 2727859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 8420128 - 8420184
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttat 209  Q
    |||||||||||||||||| | |||||||||||||||| |||||| | || |||||||    
T  8420128 tttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttat 8420184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 34429639 - 34429702
Alignment:
Q  147 aatttgtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||| ||||||||||||||||||| || |||||||||||| || | ||||||  ||||||||||    
T  34429639 aattggtttatttgagcttatctactagcataaacacttgagatattgtttggaaaagcttatg 34429702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 27857498 - 27857440
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||| ||||||| | ||||| |||||||||| |||||||| || ||||||||    
T  27857498 gtttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatg 27857440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 30865621 - 30865564
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||||  |||||||||||||||| | || |||| ||| |||||||||    
T  30865621 ttatttgagcttatctgttaacataaacacttgttagacagtttaagagagcttatgg 30865564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 35070399 - 35070443
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||||||| |||||||| ||||||||  ||||||||    
T  35070399 ttatttgagcttatctactaacataagcacttgtgggactgtttg 35070443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 6948 - 6892
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| |||||||| || ||||||||    
T  6948 ttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatg 6892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 10199340 - 10199384
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  10199340 ttatttgagcttatctactaacataagcacttgtgacactatttg 10199384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 28467244 - 28467298
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||||||||||| | ||| |||||||||||| |||||||| || |||||||||    
T  28467244 tttgagcttatctattgacacaaacacttgtgaaactgtttgggagagcttatgg 28467298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 33723314 - 33723371
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||||| |||||||| || ||||||||||||||| |||| ||| |||| |||||||    
T  33723314 ttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatgg 33723371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 38867766 - 38867820
Alignment:
Q  155 tatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||  |||||||| |||||||||||||||  ||||||||||| |||||||||    
T  38867766 tatttgagtctatctaatgacataaacacttgtg--actgtttgagagagcttatgg 38867820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 34536296 - 34536240
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||| | |||||| | |||||||||||||||| |||||||||||  |||||||    
T  34536296 ttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatg 34536240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University