View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_high_19 (Length: 259)
Name: NF13238_high_19
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 31628711 - 31628473
Alignment:
| Q |
18 |
cttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagcctataga |
117 |
Q |
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| T |
31628711 |
cttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagtctataga |
31628612 |
T |
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| Q |
118 |
tgctattaatccctatcataatcacattgctcacaacctattaatctcatctgataaccctctctcatgtgactataaacttgaatttgattatttgacg |
217 |
Q |
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| T |
31628611 |
tgctattaatccctatcataatcaaattgctcaggaccaattaacatcatcagataaccctctctcgagagactataagcttgaatttgattatgtcagg |
31628512 |
T |
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| Q |
218 |
catgatactatgctatcatccaccaaatctgttccattt |
256 |
Q |
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|||| |||||||||||||||||||||||| ||||||||| |
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| T |
31628511 |
catgctactatgctatcatccaccaaatcggttccattt |
31628473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 31678682 - 31678906
Alignment:
| Q |
20 |
tctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagcctatagatg |
119 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31678682 |
tctatgtttcttagcttcaatgacaacctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagcctatagatg |
31678781 |
T |
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| Q |
120 |
ctattaatccctatcataatcacattgctcacaacctattaatctcatctgataaccctctctcatgtgactataaacttgaatttgattatttgacgca |
219 |
Q |
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| T |
31678782 |
ctattaatccctatcat---------------aaccaattaacatcatcagactaccctttctcatgtgactataaacttgaatttgataatttcaggca |
31678866 |
T |
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| Q |
220 |
tgatactatgctatcatccaccaaatctgttccatttcat |
259 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |
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| T |
31678867 |
tgctactatgctatcatccaccaaatctgttccatttcat |
31678906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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