View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_high_20 (Length: 258)

Name: NF13238_high_20
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_high_20
NF13238_high_20
[»] chr8 (2 HSPs)
chr8 (16-250)||(24374248-24374482)
chr8 (53-116)||(17715880-17715943)
[»] chr4 (2 HSPs)
chr4 (16-246)||(22125082-22125313)
chr4 (24-116)||(11553885-11553977)
[»] chr3 (3 HSPs)
chr3 (16-177)||(42368476-42368636)
chr3 (24-117)||(24508245-24508338)
chr3 (194-244)||(7654397-7654447)
[»] chr1 (3 HSPs)
chr1 (24-222)||(24591883-24592082)
chr1 (16-221)||(13332300-13332505)
chr1 (169-220)||(22607205-22607256)
[»] chr6 (4 HSPs)
chr6 (16-117)||(22727733-22727835)
chr6 (24-133)||(9337602-9337712)
chr6 (67-117)||(14881986-14882036)
chr6 (24-117)||(17379832-17379925)
[»] chr7 (5 HSPs)
chr7 (42-116)||(19019255-19019329)
chr7 (150-243)||(19019341-19019437)
chr7 (48-117)||(9916427-9916496)
chr7 (48-117)||(9924339-9924408)
chr7 (24-133)||(10940119-10940228)
[»] chr5 (4 HSPs)
chr5 (24-115)||(25916576-25916667)
chr5 (24-102)||(20972675-20972753)
chr5 (193-244)||(29830649-29830700)
chr5 (183-246)||(20056624-20056688)
[»] chr2 (2 HSPs)
chr2 (160-246)||(17984768-17984857)
chr2 (24-98)||(26023878-26023952)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 24374482 - 24374248
Alignment:
Q  16 ggtttgtgaattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctt 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  24374482 ggtttgtgaattgtcttgttttgaaaattgtataagaattatcgatatttggttgtattaagatttagctttaaaatctctcaattcaatagtaaatctt 24374383  T
Q  116 atatttgcatagtcttaatctctttgtcattgttattgttattgttcaagcataaatccaattactcaattgttttcaaaatcgcttacgctaaaaactc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24374382 atatttgcatagtcttaatctctttgtcattgttattgttattgttcaagcataaatccaattactaaattgttttcaaaatcgcttacgctaaaaactc 24374283  T
Q  216 gataaaatttgaaaacgctattcacccccctatgc 250  Q
    |||||||||||||||||||||||||||||||||||    
T  24374282 gataaaatttgaaaacgctattcacccccctatgc 24374248  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 17715880 - 17715943
Alignment:
Q  53 attattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctta 116  Q
    |||||||||||||| ||||| | |||||| ||  | |||||||||||||||||| |||||||||    
T  17715880 attattgatatttgattgtagtaagatttggccattgaatctctcaattcaataataaatctta 17715943  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 22125313 - 22125082
Alignment:
Q  16 ggtttgtgaattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctt 115  Q
    |||||| |||| ||||||||||| | ||||| |||| |||||||||  ||| ||||||| ||||||||| || |||||||||||||||||||||| ||||    
T  22125313 ggtttgagaatcgtcttgttttgtatattgtgtaagcattattgatcattgattgtattaagatttagcatttgaatctctcaattcaatagtaattctt 22125214  T
Q  116 at----atttgcatagtcttaatctctttgtcattgttattgttattgttcaagcataaatccaattactc-aattgttttcaaaatcgcttacgctaaa 210  Q
    ||     ||| | | |||||||||||||||||||  |||||||     ||| |||| ||||||||||| || |||||||||||||  ||||| |||||||    
T  22125213 attgtgctttactttgtcttaatctctttgtcataattattgt-----ttcgagcacaaatccaattagtcaaattgttttcaaacacgctttcgctaaa 22125119  T
Q  211 aactcgataaaatttg-aaaacgctattcacccccct 246  Q
    | ||||||||| |||| |||| | |||||||||||||    
T  22125118 agctcgataaattttgtaaaatgttattcacccccct 22125082  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 11553977 - 11553885
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctta 116  Q
    ||||||||||||||| ||||||| |||   ||||| ||| ||| ||| | | |||||||||||  ||||||||||||||  | ||||||||||    
T  11553977 aattgtcttgttttgaaaattgtttaaattttattaataattgattgaaataagatttagcttgtgaatctctcaattctcttgtaaatctta 11553885  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 42368636 - 42368476
Alignment:
Q  16 ggtttgtgaattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctt 115  Q
    ||||||| |||||||||||||| |||| ||||||||||| ||| ||||||| ||| | | |||||||||||| ||||||||||||||| | |||||||||    
T  42368636 ggtttgtcaattgtcttgttttacaaactgtataagaatcattaatatttgattggaataagatttagcttttgaatctctcaattcatttgtaaatctt 42368537  T
Q  116 atatttgcatagtcttaatctctttgtcattgttattgttattgttcaagcataaatccaat 177  Q
    ||| | ||||||||||  ||| ||| |||| ||| |||| ||||||||| ||||| ||||||    
T  42368536 atagtagcatagtctt-gtctatttatcatagttgttgtgattgttcaaacataattccaat 42368476  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 24508245 - 24508338
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatcttat 117  Q
    |||||||||||||||||||||||  ||| |||||| ||| ||| ||| | | |||||||||||  |||||||||||||| || | |||||||||    
T  24508245 aattgtcttgttttgcaaattgttcaagtattattaataattgattgaaataagatttagcttatgaatctctcaattctattgcaaatcttat 24508338  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 7654397 - 7654447
Alignment:
Q  194 aaatcgcttacgctaaaaactcgataaaatttgaaaacgctattcaccccc 244  Q
    ||||||||| ||||| |||||||||||| |||  |||||||||||||||||    
T  7654397 aaatcgctttcgctacaaactcgataaattttttaaacgctattcaccccc 7654447  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 24592082 - 24591883
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatcttatatttg- 122  Q
    |||||||| || ||| | ||||| | ||||||||| ||  ||| ||||||| ||||||||| || |||||||||| ||||||||||||||||||  ||      
T  24592082 aattgtctagtattgtatattgtgtgagaattattaatcattgattgtattaagatttagcatttgaatctctcagttcaatagtaaatcttattgttca 24591983  T
Q  123 ---catagtcttaatctcttt-gtcattgttattgttattgttcaagcataaatccaattactcaa-ttgttttcaaaatcgcttacgctaaaaactcga 217  Q
       ||| ||||| |||| ||| |||||||||||||||     ||||||| ||||||||||| |||| ||||||||||| ||||||  |||||||||||||    
T  24591982 ttacattgtcttcatcttttttgtcattgttattgtt-----tcaagcacaaatccaattagtcaaattgttttcaaactcgcttttgctaaaaactcga 24591888  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 13332505 - 13332300
Alignment:
Q  16 ggtttgtgaattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctt 115  Q
    |||||| |||||||| ||||||| | ||| | | ||||||||| ||  ||| ||||||| | ||||||| || ||||||||||||| |||||||||||||    
T  13332505 ggtttgagaattgtcatgttttgtatattatgtgagaattattaatcattgattgtattaaaatttagcatttgaatctctcaattgaatagtaaatctt 13332406  T
Q  116 at----atttgcatagtcttaatctctttgtcattgttattgttattgttcaagcataaatccaattactcaa-ttgttttcaaaatcgcttacgctaaa 210  Q
    ||      || ||| |||||||||| |||||||||||||   |     ||| |||||||||||||| | |||| ||||||||||| || ||| |||||||    
T  13332405 attgtgtattacattgtcttaatctttttgtcattgttagcat-----ttcgagcataaatccaataagtcaatttgttttcaaactcactttcgctaaa 13332311  T
Q  211 aactcgataaa 221  Q
    |||||||||||    
T  13332310 aactcgataaa 13332300  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 22607205 - 22607256
Alignment:
Q  169 aaatccaattactcaattgttttcaaaatcgcttacgctaaaaactcgataa 220  Q
    ||||| ||||| |||||||||||| |||| |||| |||||||||||||||||    
T  22607205 aaatcaaattagtcaattgttttctaaattgctttcgctaaaaactcgataa 22607256  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 22727835 - 22727733
Alignment:
Q  16 ggtttgtgaattgtcttgttttgcaaattgtat-aagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatct 114  Q
    |||||| ||||||||| |||||| | ||||| | |||||||||||||| ||| ||||||| |||||||||  | |||||||||||||||||||||||| |    
T  22727835 ggtttgagaattgtctagttttgtatattgtgttaagaattattgatagttgattgtattaagatttagcaattgaatctctcaattcaatagtaaatat 22727736  T
Q  115 tat 117  Q
    |||    
T  22727735 tat 22727733  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 9337712 - 9337602
Alignment:
Q  24 aattgtcttgttttgcaaattgtat-aagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatcttatatttg 122  Q
    ||||||||||||||| ||||||| | ||| |||||| ||| ||| ||| | | | |||||||||  ||||||||||||||  | |||||||||||   ||    
T  9337712 aattgtcttgttttgaaaattgttttaagtattattaataattgattgaaataatatttagcttgtgaatctctcaattctcttgtaaatcttattagtg 9337613  T
Q  123 catagtcttaa 133  Q
    |||||||||||    
T  9337612 catagtcttaa 9337602  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 14881986 - 14882036
Alignment:
Q  67 gttgtattgagatttagctttagaatctctcaattcaatagtaaatcttat 117  Q
    |||||||| ||||| ||| || ||||||||||| |||||||||||||||||    
T  14881986 gttgtattaagattcagcatttgaatctctcaaatcaatagtaaatcttat 14882036  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 17379832 - 17379925
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatcttat 117  Q
    |||||||||||||| || |||||  ||| |||||| ||| ||||||| | | |||||||||||   |||||||||||||  | |||||||||||    
T  17379832 aattgtcttgtttttcacattgttcaagtattattaataattggttgaaataagatttagcttgtaaatctctcaattctcttgtaaatcttat 17379925  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 19019255 - 19019329
Alignment:
Q  42 attgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctta 116  Q
    ||||||| ||||||||| ||  ||| ||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  19019255 attgtatgagaattattaatcattgattgtattaagatttagcatttgaatctctcaattcaatagtaaatctta 19019329  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 19019341 - 19019437
Alignment:
Q  150 attgttattgtt-caagcataaatccaattactca-attgttttcaaaatcgcttacgctaaaaactcgataa-aatttgaaaacgctattcacccc 243  Q
    |||||||||||| |||||| ||||||||||| ||| |||||||||||| |||||| | ||||||||||||||| | |||  ||||||||||||||||    
T  19019341 attgttattgtttcaagcacaaatccaattagtcagattgttttcaaactcgctttctctaaaaactcgataatatttttgaaacgctattcacccc 19019437  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 9916496 - 9916427
Alignment:
Q  48 taagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatcttat 117  Q
    ||||||||||| ||| ||| ||||||| |||||| ||  | |||||||||||||||||||||||||||||    
T  9916496 taagaattatttataattgattgtattaagatttggcaattgaatctctcaattcaatagtaaatcttat 9916427  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 9924408 - 9924339
Alignment:
Q  48 taagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatcttat 117  Q
    ||||||||||| ||| ||| ||||||| |||||| ||  | |||||||||||||||||||||||||||||    
T  9924408 taagaattatttataattgattgtattaagatttggcaattgaatctctcaattcaatagtaaatcttat 9924339  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 10940119 - 10940228
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatcttatatttgc 123  Q
    |||||||||||||||||||||||  ||| ||||||  || ||| ||| | | |||||||||||  ||| ||||||||||  | |||||||||||   |||    
T  10940119 aattgtcttgttttgcaaattgttcaagtattattagtaattgattgaaataagatttagcttgtgaaactctcaattctcttgtaaatcttattagtgc 10940218  T
Q  124 atagtcttaa 133  Q
    ||||||||||    
T  10940219 atagtcttaa 10940228  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 25916667 - 25916576
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattcaatagtaaatctt 115  Q
    |||||||||||||||||||||||  |||||||||| ||||||| ||||| | |||||||  |   |||||||||||||| || |||||||||    
T  25916667 aattgtcttgttttgcaaattgttcaagaattattaatatttgattgtaataagatttatttagggaatctctcaattctattgtaaatctt 25916576  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 20972675 - 20972753
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctcaattc 102  Q
    |||||||||||||||||| ||||  |||||||||| ||| ||| ||||| | ||||||| |||  ||||||||||||||    
T  20972675 aattgtcttgttttgcaagttgttcaagaattattaataattgattgtaataagatttatcttatgaatctctcaattc 20972753  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 29830700 - 29830649
Alignment:
Q  193 aaaatcgcttacgctaaaaactcgataaaatttgaaaacgctattcaccccc 244  Q
    |||||||||| ||||| |||||||||||||||| ||| | ||||||||||||    
T  29830700 aaaatcgctttcgctacaaactcgataaaattttaaatcactattcaccccc 29830649  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 20056688 - 20056624
Alignment:
Q  183 aattgttttcaaaatcgcttacgctaaaaactcgataaaatttg-aaaacgctattcacccccct 246  Q
    |||||||||||||  || || ||||| |||||||||||| |||| ||||||||||||||| ||||    
T  20056688 aattgttttcaaacacgttttcgctacaaactcgataaattttgaaaaacgctattcacctccct 20056624  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 17984768 - 17984857
Alignment:
Q  160 ttcaagcataaatccaattactcaa--ttgttttcaaaa-tcgcttacgctaaaaactcgataaaatttgaaaacgctattcacccccct 246  Q
    |||||||||||||||||| | |||   |||||||||||| | |||| |||||||||| ||||||| ||| |||||| |||||||||||||    
T  17984768 ttcaagcataaatccaataagtcatctttgttttcaaaacttgctttcgctaaaaacgcgataaacttttaaaacgttattcacccccct 17984857  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 26023878 - 26023952
Alignment:
Q  24 aattgtcttgttttgcaaattgtataagaattattgatatttggttgtattgagatttagctttagaatctctca 98  Q
    |||||||||||||||||||||||  ||| | |||| ||||||| ||| | | |||||||||||| ||||| ||||    
T  26023878 aattgtcttgttttgcaaattgttcaagtactattaatatttgattgaaataagatttagcttttgaatcactca 26023952  T

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