View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_high_27 (Length: 230)
Name: NF13238_high_27
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_high_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39109485 - 39109718
Alignment:
| Q |
1 |
tcatcaatcaccttcttcctttctatggtatgtcacttcattcacattgtgactgaataatctccacaatatatgcta----atatggccattctaagat |
96 |
Q |
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| T |
39109485 |
tcatcaatcaccttcttcctttctatggtatgtcacttcattcacattgtgactgaataatctctacaatatatgctagctaatatggccattctaagtt |
39109584 |
T |
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| Q |
97 |
acaaaagtcaacccctttgacctctttaattttttgtttcccttctgttatcttaaattttaaatgttagacactttgatcatttatgtcactttttgat |
196 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39109585 |
acaaaagtcaatccctttgacctctttaattttttgtttccattttgttatcttaaattttaaatgttagacactttgatcatttatgtcactttttggt |
39109684 |
T |
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| Q |
197 |
ttgaatatgacacaaaggatttgaaagactcaaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39109685 |
ttgaatatgacacaaaggatttgaaagactcaaa |
39109718 |
T |
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