View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_high_30 (Length: 217)
Name: NF13238_high_30
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 31678887 - 31679087
Alignment:
| Q |
1 |
ccaaatctgttccatttcatgatggattttagtgacctaaattaggtaagtcgtgtatggtgatttaaggaatacatgtcgattgttaagaaaatattca |
100 |
Q |
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| T |
31678887 |
ccaaatctgttccatttcatgatggtttttagtgacctaaattaggtaagtcttgtatggtgatttaaggaat--atgtcagttgttaag-aaatatgca |
31678983 |
T |
|
| Q |
101 |
atttattctctaaagttgtctttcaattaca-------tttgaatttgattatgtaaaaagttaataatgccttgtaatttaaagataaattgttctgtt |
193 |
Q |
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| T |
31678984 |
atttattctctaaaattgtctttcaattgcatttgaattttgaatttgattatgtaaaaagttaataatgccttgtaatttaaagataaattgttatgtt |
31679083 |
T |
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| Q |
194 |
tcat |
197 |
Q |
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|||| |
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| T |
31679084 |
tcat |
31679087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 31628489 - 31628310
Alignment:
| Q |
1 |
ccaaatctgttccatttcatgatggattttagtgacctaaattaggtaagtcgtgtatggtgatttaaggaatacatgtcgattgttaagaaaatattca |
100 |
Q |
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||||||| ||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| |||||||||||||||| || |
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| T |
31628489 |
ccaaatcggttccatttaatgatggattttagtcacctaaattagataagttgtgtatggtgatataaggaat--ttgttaattgttaagaaaatatgca |
31628392 |
T |
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| Q |
101 |
atttattctctaaagttgtctttcaattacatttgaatttgattatgtaaaaagttaa-taatgccttgtaatttaaagataa |
182 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31628391 |
atttattctctaaagttgtcttt-aattacatttgaacttgattatgtaaaaagttaattaatgccttgtaatttaaagataa |
31628310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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