View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_low_1 (Length: 645)
Name: NF13238_low_1
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Complemental strand, 39110214 - 39109793
Alignment:
| Q |
15 |
aaatagaaggcaatgcaattaccattacttcttgaagtcttttgatggatgcagttgtgcctgagccacagaagatgattgcatcatcttctccgccacc |
114 |
Q |
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| T |
39110214 |
aaatagaaggcactgcaattaccattacttcttgaagtcttttgatggatgcagttgtgcctgagccacagaagatgattgcatcatcttctccgccacc |
39110115 |
T |
|
| Q |
115 |
taagcatttcttaatgtactcagttgcttcatgtagcatttttgttgttctgcttcccacataactgtcgcaagtatgagtattccctgtccaagaataa |
214 |
Q |
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| T |
39110114 |
taagcatttcttaatgtactcagttgcttcatgtagcatttttgttgttctgcttcccacataactgtcgcaagtatgagtattccctgtccaagaataa |
39110015 |
T |
|
| Q |
215 |
caaggctaaaagagatgctcacacattaatattttttagtctcttgtcttctataattttctccatcaacctaaatgctttggttgcaaatcatcaattt |
314 |
Q |
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| T |
39110014 |
caaggctaaaagagatgctcacacattaatattttttagtctcttgtcttctataattttctccatcaacctaaatgctttggttgcaaatcatcaattt |
39109915 |
T |
|
| Q |
315 |
tggtctctttattagaggaagttttggttggtgacaactatttagacatactatttgagtatcctcacatatttaaaaaatagttttgctaactagtgtg |
414 |
Q |
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| T |
39109914 |
tggtctctttattagaggaagttttggttggtgacaactatttggacatactatttgagtatcctcgcatatttaaaaaacagttttgctaactagtgtg |
39109815 |
T |
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| Q |
415 |
taaggacaatttttaaaaattt |
436 |
Q |
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| T |
39109814 |
taaggacaattttttaaaattt |
39109793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 39101084 - 39100922
Alignment:
| Q |
36 |
ccattacttcttgaagtcttttgatggatgcagttgtgcctgagccacagaagatgattgcatcatcttctccgccacctaagcatttcttaatgtactc |
135 |
Q |
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| T |
39101084 |
ccattacttcttgaagcctcttgatggctgccgttgcgcccgagccgcatagcatgagtgcatcgtcttccccaccacctaagcattttttaatgtactt |
39100985 |
T |
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| Q |
136 |
agttgcttcatgtagcatttttgttgttctgcttcccacataactgtcgcaagtatgagtatt |
198 |
Q |
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| T |
39100984 |
ggttgcttcatgtaccatttttgttgtcctgtttccaacgtaactctcacaagtatgggtatt |
39100922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 629
Target Start/End: Complemental strand, 39109794 - 39109733
Alignment:
| Q |
569 |
ttagtttgaccacgtaagtattttccttctta-cttacaaagttaaatatgttagtcatttc |
629 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39109794 |
ttagtttgaccatgtaagtattttccttcttatcttacaaagttaaatatgttagtcatttc |
39109733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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