View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_low_12 (Length: 442)
Name: NF13238_low_12
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 35639593 - 35639965
Alignment:
| Q |
7 |
aatataacttttttccaaccgatctcttctaccctcgtccacaacctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacagtga |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35639593 |
aatataacttttttccaaccgatctcttctaccctcgtccacagcctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacggtga |
35639692 |
T |
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| Q |
107 |
agatcttcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttctttggtttatactcacaaaacacaatctttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35639693 |
agatcttcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttctttggtttatactcacaaaacacaatctttt |
35639792 |
T |
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| Q |
207 |
ggtgtcgttgacaataacatgtctaaattttcactagacccactttctttgatggtttggatggatcaagaggatcaagaatagagcacaaaag-nnnnn |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35639793 |
ggtgtcgttgacaataacatgtctaaattttcactagacccactttctttgatggtttggatggatcaagaggatcaagaatagagcacaaaagtttttt |
35639892 |
T |
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| Q |
306 |
nnngtaagagactataatatttttatcttgtttaagactatgtaaattatatttaagagattaatttctcttc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35639893 |
tttgtaagagactataatatttttatcttgtttaagactatgtaaattatttttaagagattaatttctcttc |
35639965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 35642321 - 35642603
Alignment:
| Q |
7 |
aatataacttttttccaaccgatctcttctaccctcgtccacaacctgaacaatccacaacttctcccaccgtgcttcctctcaaaactccaaacagtga |
106 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||| | |||||||||||||||||||||||| ||||| |
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| T |
35642321 |
aatacaacttttttccaactgatctcttctaccctcgtccacaacctcaacaatctactgcttctcctaacgtgcttcctctcaaaactccaaatagtga |
35642420 |
T |
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| Q |
107 |
agatcttcctcagactcaacaaaaacaaccagctaggagcatgatcaaagtaaacccttctacttcttctttggtttatactcacaaaacacaatctttt |
206 |
Q |
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||||||||| || ||||||||| ||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
35642421 |
agatcttccacaaactcaacaacaacaaccagctagtagcatgatcaaagccaccccttctacttcatctttggtttatactcacaacacacaatctttt |
35642520 |
T |
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| Q |
207 |
ggtgtcgttgacaataacatgtctaaattttcactagacccactttctttgatggtttggatggatcaagaggatcaagaata |
289 |
Q |
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| ||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
35642521 |
gctgttgttgacaataacatatctaaattgtcactaaacccactttctttgatggtttggatggatcaagaagatgaagaata |
35642603 |
T |
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