View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_low_13 (Length: 429)

Name: NF13238_low_13
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_low_13
NF13238_low_13
[»] chr1 (4 HSPs)
chr1 (1-284)||(35231103-35231390)
chr1 (1-102)||(35242929-35243030)
chr1 (202-282)||(35242830-35242911)
chr1 (311-356)||(35242715-35242759)
[»] chr6 (8 HSPs)
chr6 (331-412)||(6523705-6523786)
chr6 (5-202)||(6465567-6465766)
chr6 (12-199)||(6520315-6520504)
chr6 (2-199)||(6515849-6516048)
chr6 (157-245)||(6528587-6528677)
chr6 (12-115)||(6472877-6472980)
chr6 (1-30)||(6523667-6523696)
chr6 (153-201)||(6526733-6526781)
[»] chr7 (1 HSPs)
chr7 (1-115)||(9665133-9665247)
[»] chr4 (1 HSPs)
chr4 (1-115)||(13536157-13536271)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 35231390 - 35231103
Alignment:
Q  1 ttgttattgcagatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagt 100  Q
    ||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||  |||||||||  |||||||| || ||||||||||    
T  35231390 ttgttatcgcagatgaatttagtccctcaacatcattcaaaggaaccgaaacaatttcataatgtaattcttctttaacaccatttataaagtgccaagt 35231291  T
Q  101 tacagaaacaggatcgacttttcaaaggccatagat------caacttcaccaacaaactctccattaatgctattatactttaaatcattcaaaacagt 194  Q
    |||| |||||| || |  |||||||| ||||| |||      ||||  |||||||||  || | || |||||| |||||||| |||||||||||||||||    
T  35231290 tacaaaaacagaattg-gttttcaaaagccatggatcacaaccaacaacaccaacaagttcactatcaatgcttttatacttaaaatcattcaaaacagt 35231192  T
Q  195 aacatta-tataatcgttctcagat-aaagctgtagatgaagagagtgtgctacttctaacaataacaaaccaccaaaacctttcttctcca 284  Q
    ||||||| || |||| ||||||||| ||||||| ||||||||||  ||| |||||  ||||   |||||| ||||||| |||| ||||||||    
T  35231191 aacattattacaatcattctcagataaaagctgaagatgaagaggatgtactactgttaac---aacaaatcaccaaacccttccttctcca 35231103  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 35243030 - 35242929
Alignment:
Q  1 ttgttattgcagatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagt 100  Q
    |||||||||||||||  ||||| ||||||| ||| ||| || |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35243030 ttgttattgcagatgcctttagtccctcaaaatcgttcaaaggaaccgaaactatttcataatgtgcttcttctttcacaccatttgtagagtgccaagt 35242931  T
Q  101 ta 102  Q
    ||    
T  35242930 ta 35242929  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 35242911 - 35242830
Alignment:
Q  202 tataatcgttctcagataaa-gctgtagatgaagagagtgtgctacttctaacaataacaaaccaccaaaacctttcttctc 282  Q
    ||||||| ||||||| |||| | || |||||||||| |||||||| | |||||||||||||| ||||||| |||||||||||    
T  35242911 tataatcattctcagctaaaagatgaagatgaagagggtgtgctattgctaacaataacaaatcaccaaaccctttcttctc 35242830  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 35242759 - 35242715
Alignment:
Q  311 atagaacatgtcaagcacaatctcatttttcttgaatcagaatctg 356  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||    
T  35242759 atagaacatgtcaagaacaatcttattttt-ttgaatcagaatctg 35242715  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 412
Target Start/End: Original strand, 6523705 - 6523786
Alignment:
Q  331 tctcatttttcttgaatcagaatctgggtacaaaaactatccgaatctacgaagcactaacacaaacatcttacacgacact 412  Q
    |||||||||||||||||||||||||| | ||||||  ||||| |||||| || |||||||||||||||||||||||||||||    
T  6523705 tctcatttttcttgaatcagaatctgtgaacaaaacttatccaaatctatgaggcactaacacaaacatcttacacgacact 6523786  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 6465567 - 6465766
Alignment:
Q  5 tattgcagatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagttaca 104  Q
    ||||||||| ||||| | ||| |||||||| ||| ||||||| |||||||| |||| ||| | |||||||||  |||| || ||||| ||||||||||||    
T  6465567 tattgcagacgaattcaaaccttcaacatctttcaaaagaacggaaacaatctcatcatgagattcttctttaacacccttagtagaatgccaagttaca 6465666  T
Q  105 gaaacaggatcgacttttcaaaggccatagat---caacttcaccaacaaactctccattaatgctattatactttaaatcattcaaaacagtaacatta 201  Q
    ||||| ||||||  |||||||   ||||  ||   ||||  |||||||||  || |||| ||| ||  ||||||| ||||||||||||||||||||||||    
T  6465667 gaaaccggatcg-gttttcaacaaccatgaatcaccaacaacaccaacaagatcaccatcaatacttctatacttaaaatcattcaaaacagtaacatta 6465765  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 6520504 - 6520315
Alignment:
Q  12 gatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagttacagaaacag 111  Q
    |||||||||||| |||||||||| ||| ||||  | ||||||||||| | |||   |||||  ||  ||||||||| ||| |||||||||||||||||||    
T  6520504 gatgaatttagatcctcaacatctttcaaaagtgctgaaacaatttctttatggtattctttcttaacaccatttgaagaatgccaagttacagaaacag 6520405  T
Q  112 gatcgacttttcaaaggccatagat---caacttcaccaacaaactctccattaatgctattatactttaaatcattcaaaacagtaacat 199  Q
    |||| | ||||||||  ||||  ||   |||   |||||||||  ||||||| |||||| |||||||| |||||| |||||| ||||||||    
T  6520404 gatc-agttttcaaaaaccatgaatcaccaatgacaccaacaaggtctccatcaatgcttttatacttaaaatcactcaaaatagtaacat 6520315  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 6516048 - 6515849
Alignment:
Q  2 tgttattgcagatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagtt 101  Q
    ||||||||| |||||||||| ||| |||||||| ||  ||||   |||||||||||||| ||||| |||||||||   ||| ||  | || |||||||||    
T  6516048 tgttattgctgatgaatttaaaccttcaacatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagtt 6515949  T
Q  102 acagaaacaggatcgacttttcaaaggccatagat---caacttcaccaacaaactctccattaatgctattatactttaaatcattcaaaacagtaaca 198  Q
    |||||||  ||||||  ||||||||  ||||  ||   ||||  |||||||||  ||||||| |||||| | |||||| ||||||| ||||||||| |||    
T  6515948 acagaaatcggatcg-gttttcaaaatccatgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttgaaatcatccaaaacagttaca 6515850  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 6528587 - 6528677
Alignment:
Q  157 ccattaatgctattatactttaaatcattcaaaacagtaacatt-atataatcgttctcagat-aaagctgtagatgaagagagtgtgcta 245  Q
    |||| |||||| |||||||| |||||| |||||||||||| |||  || |||| ||||||||| ||||||| |||||||||| ||||||||    
T  6528587 ccatcaatgcttttatacttgaaatcactcaaaacagtaatattcttacaatctttctcagataaaagctgaagatgaagagggtgtgcta 6528677  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 6472980 - 6472877
Alignment:
Q  12 gatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagttacagaaacag 111  Q
    ||||| ||||||| ||||||||| || |||||| | ||||||||||| | ||||| |||||||||  |||| ||  | || |||||||| | ||||||||    
T  6472980 gatgactttagactctcaacatcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacag 6472881  T
Q  112 gatc 115  Q
    ||||    
T  6472880 gatc 6472877  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6523696 - 6523667
Alignment:
Q  1 ttgttattgcagatgaatttagaccctcaa 30  Q
    ||||||||||||||||||||||||||||||    
T  6523696 ttgttattgcagatgaatttagaccctcaa 6523667  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 6526733 - 6526781
Alignment:
Q  153 ctctccattaatgctattatactttaaatcattcaaaacagtaacatta 201  Q
    |||||||| |||||  |||||||| |||||| |||||||||||||||||    
T  6526733 ctctccatcaatgcgtttatacttaaaatcactcaaaacagtaacatta 6526781  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9665247 - 9665133
Alignment:
Q  1 ttgttattgcagatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagt 100  Q
    ||||||||  ||||||||||||||||||||||||| || ||||    ||||| ||||| | |||  ||||||| ||| | |||||||||||  |||| ||    
T  9665247 ttgttattaaagatgaatttagaccctcaacatcactcaaaagcgatgaaacgatttctttatggtgttcttccttcacgccatttgtagatagccatgt 9665148  T
Q  101 tacagaaacaggatc 115  Q
    ||||||||| |||||    
T  9665147 tacagaaaccggatc 9665133  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 13536271 - 13536157
Alignment:
Q  1 ttgttattgcagatgaatttagaccctcaacatcattcgaaagaaccgaaacaatttcataatgtggttcttctttcgcaccatttgtagagtgccaagt 100  Q
    ||||||||  ||||||||||||||||||||||||| || ||||    ||||| ||||| | |||  ||||||| ||| | |||||||||||  |||| ||    
T  13536271 ttgttattaaagatgaatttagaccctcaacatcactcaaaagcgatgaaacgatttctttatggtgttcttccttcacgccatttgtagatagccatgt 13536172  T
Q  101 tacagaaacaggatc 115  Q
    ||||||||| |||||    
T  13536171 tacagaaaccggatc 13536157  T

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