View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_low_14 (Length: 427)
Name: NF13238_low_14
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 411
Target Start/End: Complemental strand, 28916600 - 28916199
Alignment:
| Q |
6 |
caagaatatggtcggatcttgaatgagtgctaacatacaattcaccgcagagataacgaccattggaaatctccagcaccggaatcttgtaaaatcaata |
105 |
Q |
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|||||| ||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28916600 |
caagaaaatgatcggatctcgcatgagcgctaacatacaattcaccgcagagataacgaccattggaaatctccagcaccggaatcttgtaaaatcaaca |
28916501 |
T |
|
| Q |
106 |
ggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatct |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28916500 |
ggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtatttgttcaaaatcttctaacattagaatct |
28916401 |
T |
|
| Q |
206 |
ggcttatatatatatttcaatgtttctgaaaaatcagcatcttcaaatgtagaatctttggttgcatcagaagaaaaaacgggtggctccgaaatgggct |
305 |
Q |
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| T |
28916400 |
ggcttat----atatttcaatgtttctgaaagatcagcatcttcaaatgtagaatctttggttgcattagaagaaaaaacggatggcttcgaaatgggtt |
28916305 |
T |
|
| Q |
306 |
ggcccacgtaagggttggtgatggtgaaatcgttaaggtttggatttggatatggatcggagagaaggattaggttaccttggtcatcgaatttgtaggt |
405 |
Q |
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| T |
28916304 |
ggcccacgtaagggttggtgatggtgaaatcgttaaggtttggatttggatctggatcagagagaaggattaggttaccttggtcatcgaatttgtaggt |
28916205 |
T |
|
| Q |
406 |
ggtttc |
411 |
Q |
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|||||| |
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| T |
28916204 |
ggtttc |
28916199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 122 - 411
Target Start/End: Complemental strand, 41596890 - 41596611
Alignment:
| Q |
122 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatatatatt |
221 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| | |
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| T |
41596890 |
agaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtttttgttcaaattcttcttccattaaaatctggcttatatat----t |
41596795 |
T |
|
| Q |
222 |
tcaatgtttctgaaaaatcagcatcttcaaatgtagaatctttggttgcatcagaagaaaaaacgggtggctccgaaatgggctggcccacgtaagggtt |
321 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||| |||||||| |
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| T |
41596794 |
tcactgtttctgaaaaatcagcatcttcaaaggtagaatctttggttgtatcagaagaaaaaactagtggctccgaattggatgggcccacataagggtt |
41596695 |
T |
|
| Q |
322 |
ggtgatggtgaaatcgttaaggtttggatttggatatggatcggagagaaggattaggttaccttggtcatcgaatttgtaggtggtttc |
411 |
Q |
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| T |
41596694 |
ggtgatggtgaaatcgtcaaggtttggattt------ggatcagagagaaggattaagttaccatggtcatcgaatttgtaggttgtttc |
41596611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 122 - 342
Target Start/End: Complemental strand, 27326153 - 27325941
Alignment:
| Q |
122 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatatatatt |
221 |
Q |
| |
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||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||| | |
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| T |
27326153 |
agaaaattttctcagta----gaagactaagcgggtcataacacatacatggtttttgttcaaaatctttttccatcaaaatatggcttatatat----t |
27326062 |
T |
|
| Q |
222 |
tcaatgtttctgaaaaatcagcatcttcaaatgtagaatctttggttgcatcagaagaaaaaacgggtggctccgaaatgggctggcccacgtaagggtt |
321 |
Q |
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||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||| |||| ||| |
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| T |
27326061 |
tcactgcttctgaaaaattagcatctttaaaggtagaatctttggttgcatcagaagaaaaaacgagtggctccaaattggatgggcccacataagagtt |
27325962 |
T |
|
| Q |
322 |
ggtgatggtgaaatcgttaag |
342 |
Q |
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|||||| |||||||| ||||| |
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| T |
27325961 |
ggtgatagtgaaatctttaag |
27325941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 27324991 - 27324938
Alignment:
| Q |
358 |
tggatcggagagaaggattaggttaccttggtcatcgaatttgtaggtggtttc |
411 |
Q |
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|||||| ||||||| |||||||||| | ||||||||||||||| |||| ||||| |
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| T |
27324991 |
tggatcagagagaaagattaggttaacatggtcatcgaatttgcaggttgtttc |
27324938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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