View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_low_15 (Length: 351)

Name: NF13238_low_15
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_low_15
NF13238_low_15
[»] chr2 (7 HSPs)
chr2 (1-333)||(18234377-18234713)
chr2 (12-84)||(18232734-18232806)
chr2 (152-210)||(11513978-11514036)
chr2 (155-201)||(13866969-13867015)
chr2 (152-197)||(14302917-14302962)
chr2 (154-198)||(33931502-33931546)
chr2 (154-198)||(41170704-41170748)
[»] chr8 (16 HSPs)
chr8 (87-211)||(31875454-31875584)
chr8 (217-320)||(31876147-31876251)
chr8 (248-308)||(31562183-31562243)
chr8 (12-85)||(31553763-31553836)
chr8 (248-307)||(31551116-31551175)
chr8 (154-210)||(16162842-16162898)
chr8 (19-85)||(31564151-31564217)
chr8 (154-207)||(9700086-9700139)
chr8 (154-210)||(1664451-1664507)
chr8 (153-209)||(31915224-31915280)
chr8 (157-211)||(6496826-6496880)
chr8 (153-206)||(1561363-1561416)
chr8 (154-207)||(7714327-7714380)
chr8 (154-210)||(1889067-1889123)
chr8 (154-210)||(7918713-7918769)
chr8 (154-190)||(22705044-22705080)
[»] chr7 (5 HSPs)
chr7 (154-211)||(20547322-20547379)
chr7 (154-199)||(1710822-1710867)
chr7 (154-210)||(33894709-33894765)
chr7 (153-198)||(8427107-8427152)
chr7 (158-210)||(25670522-25670574)
[»] chr3 (6 HSPs)
chr3 (154-210)||(44014730-44014786)
chr3 (154-211)||(22667484-22667541)
chr3 (154-211)||(22724123-22724180)
chr3 (156-211)||(11041160-11041215)
chr3 (153-210)||(20210859-20210916)
chr3 (154-210)||(50211817-50211873)
[»] chr5 (10 HSPs)
chr5 (154-209)||(4855778-4855833)
chr5 (154-198)||(444016-444060)
chr5 (154-210)||(12407662-12407718)
chr5 (154-194)||(36796639-36796679)
chr5 (147-198)||(7907976-7908027)
chr5 (152-210)||(11684482-11684540)
chr5 (157-198)||(4855865-4855906)
chr5 (152-201)||(11095425-11095474)
chr5 (154-187)||(11615586-11615619)
chr5 (156-208)||(19627568-19627620)
[»] chr4 (7 HSPs)
chr4 (155-210)||(18628486-18628541)
chr4 (154-210)||(46860000-46860056)
chr4 (147-211)||(47970377-47970441)
chr4 (154-211)||(9316606-9316663)
chr4 (154-198)||(1017122-1017166)
chr4 (154-210)||(4071960-4072016)
chr4 (153-193)||(11802633-11802673)
[»] chr6 (6 HSPs)
chr6 (157-198)||(2727818-2727859)
chr6 (153-209)||(8420128-8420184)
chr6 (147-210)||(34429639-34429702)
chr6 (152-210)||(27857440-27857498)
chr6 (154-211)||(30865564-30865621)
chr6 (154-198)||(35070399-35070443)
[»] scaffold0199 (1 HSPs)
scaffold0199 (154-210)||(6892-6948)
[»] chr1 (5 HSPs)
chr1 (154-198)||(10199340-10199384)
chr1 (157-211)||(28467244-28467298)
chr1 (154-211)||(33723314-33723371)
chr1 (155-211)||(38867766-38867820)
chr1 (154-210)||(34536240-34536296)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 18234713 - 18234377
Alignment:
Q  1 ccaatatacataaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctccttaaagaagtgcagg 100  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18234713 ccaatatagaaaaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccattcctccttaaagaagtgcagg 18234614  T
Q  101 aagaatgtagagacttcgatttgctaatt----gatctttgtttttgtttaatttgtttatttgagcttatctaataacataaacacttgtgacactgtt 196  Q
    ||| |||||||||||| ||| | | ||||    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  18234613 aaggatgtagagactttgatctacgaattggtcgatctttgttcttgtttaatttgtttatttgagcttatctaataacataaacacttgtgacgttgtt 18234514  T
Q  197 tgagaaagcttatggttagttactaatcaaggataatgcaaattcataaaccatttgcacaaagattaacattcaacgccacttctgtttcaccatattt 296  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  18234513 tgagaaagcttatggttagttactaatcaagggtaatgcaaattcataaaccatttgcacaaagactaacattcaacaccacttctgtttcaccatattt 18234414  T
Q  297 gagtagttttgtatggttagttaccaaatgaatgatg 333  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18234413 gagtagttttgtatggttagttactaaatgaatgatg 18234377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 18232806 - 18232734
Alignment:
Q  12 aaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctc 84  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||| |||||    
T  18232806 aaatatcttgataatcacatagatgttctcagatttcgcagtgtatgtgaatcatttcgttcttccattcctc 18232734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 11514036 - 11513978
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||| ||||||| || ||||| ||||||||| ||||||| ||| ||||||||    
T  11514036 gtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttatg 11513978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 13867015 - 13866969
Alignment:
Q  155 tatttgagcttatctaataacataaacacttgtgacactgtttgaga 201  Q
    |||||||||||||||| |  ||||||||||||||| |||||||||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgaga 13866969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 14302962 - 14302917
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgttt 197  Q
    ||||||||||||||||||| || |||||||| |||||| |||||||    
T  14302962 gtttatttgagcttatctattagcataaacatttgtgagactgttt 14302917  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 33931502 - 33931546
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||| |||||| ||||| |||||||||| |||||||    
T  33931502 ttatttgagcttacctaatagcataagcacttgtgactctgtttg 33931546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 41170748 - 41170704
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||| ||||||| |||||||||||||||||| ||| ||||    
T  41170748 ttatttgagtttatctactaacataaacacttgtgagactatttg 41170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 31875454 - 31875584
Alignment:
Q  87 taaagaagtgcaggaagaatgtagagacttcgatttgctaattgatctttgtttttgtttaatttgtttatttgagcttat------ctaataacataaa 180  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||      ||| || ||||||    
T  31875454 taaagaagtgcaggaaggatttagagacttcgattcgctaattgatctttgttcttgtttaatttgtttatttgagcttatctacgactactagcataaa 31875553  T
Q  181 cacttgtgacactgtttgagaaagcttatgg 211  Q
    |||| ||||||||||||||||||||||||||    
T  31875554 cactagtgacactgtttgagaaagcttatgg 31875584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 31876147 - 31876251
Alignment:
Q  217 tactaatcaa-ggataatgcaaattcataaaccatttgcacaaagattaacattcaacgccacttctgtttcaccatatttgagtagttttgtatggtta 315  Q
    |||||||||| || ||||||| | ||| ||| ||||| || ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31876147 tactaatcaaagggtaatgcagactcagaaatcatttccataaatactaacattcaacaccacttctgtttcaccatatttgagtagttttgtatggtta 31876246  T
Q  316 gttac 320  Q
    |||||    
T  31876247 gttac 31876251  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 31562243 - 31562183
Alignment:
Q  248 catttgcacaaagattaacattcaacgccacttctgtttcaccatatttgagtagttttgt 308  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31562243 catttgcactaagattaacattcaacaccacttctgtttgaccatatttgagtagttttgt 31562183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 31553836 - 31553763
Alignment:
Q  12 aaatatgttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctcc 85  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| || ||||||||| ||||||||| ||||||    
T  31553836 aaatatcttgataatcacatagatgttctcagatttcgcagtgtctgcgaatcatttcgttcttccattcctcc 31553763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31551175 - 31551116
Alignment:
Q  248 catttgcacaaagattaacattcaacgccacttctgtttcaccatatttgagtagttttg 307  Q
    |||||||||||||||||||||||||| ||| ||  |||||||| ||||||||||||||||    
T  31551175 catttgcacaaagattaacattcaacaccaattaggtttcaccttatttgagtagttttg 31551116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 16162898 - 16162842
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||||||    
T  16162898 ttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatg 16162842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 31564217 - 31564151
Alignment:
Q  19 ttgataatcacatagatgttctcaaatttcacagtgtttgtgaatcattttgttcttccagtcctcc 85  Q
    ||||||||||||||||| |||||| |||||  ||||| || ||||||||| ||||||||| ||||||    
T  31564217 ttgataatcacatagatattctcagatttcggagtgtatgcgaatcatttcgttcttccattcctcc 31564151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 9700139 - 9700086
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagctt 207  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||||||| |||||    
T  9700139 ttatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 1664507 - 1664451
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| |||||||| || ||||||||    
T  1664507 ttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatg 1664451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 31915224 - 31915280
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttat 209  Q
    |||| ||||| ||||||| | ||||||| |||||||| |||||||||||||||||||    
T  31915224 tttacttgagtttatctattcacataaatacttgtgagactgtttgagaaagcttat 31915280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 6496826 - 6496880
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||| ||||||| |||||||| ||||||||  |||||||| ||||||||||||    
T  6496826 tttgagtttatctactaacataatcacttgtgtgactgtttgggaaagcttatgg 6496880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 1561416 - 1561363
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagct 206  Q
    ||||||||| ||||||||||  ||||||||||||||| | ||||||||| ||||    
T  1561416 tttatttgatcttatctaatggcataaacacttgtgagattgtttgagagagct 1561363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 7714380 - 7714327
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagctt 207  Q
    |||||||||||||| ||||  ||||||||||||||| ||||||||  |||||||    
T  7714380 ttatttgagcttatataatgtcataaacacttgtgagactgtttggaaaagctt 7714327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 1889067 - 1889123
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| |  ||||||||||| ||| |||||||| |||||||||||    
T  1889067 ttatttgagtttatctactggcataaacacttttgagactgtttgggaaagcttatg 1889123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 7918713 - 7918769
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||| | |||||||| || ||||||||||||||| |||||||| || ||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatg 7918769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 22705044 - 22705080
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgac 190  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  22705044 ttatttgagcttacctattaacataaacacttgtgac 22705080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 20547322 - 20547379
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||| || ||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  20547322 ttattttagtttatctaatgacataaacacttgtgatactgtttgagagagcttatgg 20547379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 1710867 - 1710822
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttga 199  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||    
T  1710867 ttatttgagcttatctactaacataatcccttgtgacactgtttga 1710822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 33894765 - 33894709
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||||||| ||| |||||| ||||||||| |||||||| || ||||||||    
T  33894765 ttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatg 33894709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 8427152 - 8427107
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||||||||||||||||| ||||||||  |||||||| ||||||||    
T  8427152 tttatttgagcttatctactaacataagtacttgtgagactgtttg 8427107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 25670522 - 25670574
Alignment:
Q  158 ttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||||| | |||||| | ||||||| ||||||||||||| ||||||    
T  25670522 ttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatg 25670574  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 44014730 - 44014786
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||||||    
T  44014730 ttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatg 44014786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 22667541 - 22667484
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||||| || ||||||    
T  22667541 ttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatgg 22667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 22724180 - 22724123
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||||| || ||||||    
T  22724180 ttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatgg 22724123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 11041160 - 11041215
Alignment:
Q  156 atttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||| ||| |||| ||||||||  ||||||||||| |||||||||    
T  11041160 atttgagcttatctactaagataagcacttgtgggactgtttgagagagcttatgg 11041215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 20210859 - 20210916
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||||| ||||||| | |||||| ||||||||| ||||||||||| | ||||||    
T  20210859 tttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatg 20210916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 50211873 - 50211817
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||| |||||||||| |||||||| ||||||| | ||||||||||| | ||||||    
T  50211873 ttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatg 50211817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 4855833 - 4855778
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttat 209  Q
    |||||||||||||| |||| || ||||||||||||| ||||||||||| |||||||    
T  4855833 ttatttgagcttatataatgacttaaacacttgtgagactgtttgagagagcttat 4855778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 444060 - 444016
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||    
T  444060 ttatttgagcttatctaattgcataaacacttgtgagactgtttg 444016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 12407662 - 12407718
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||| |||||||| | |||||||||||||||| || |||||||| ||||||||    
T  12407662 ttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttatg 12407718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 36796639 - 36796679
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactg 194  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  36796639 ttatttgagcttatctaatgacataaacacttgtgagactg 36796679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 7908027 - 7907976
Alignment:
Q  147 aatttgtttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||| ||||||||    
T  7908027 aattggttcatttgagtttatctaataacataaacacttatgagactgtttg 7907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 11684540 - 11684482
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||||||||||| |  ||| | ||||||||| ||||||| ||||||||||||    
T  11684540 gtttatttgagcttatctactgtcatgagcacttgtgagactgtttaagaaagcttatg 11684482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 4855906 - 4855865
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    |||||||||||||||| || ||||||||||||| ||||||||    
T  4855906 tttgagcttatctaatgacttaaacacttgtgagactgtttg 4855865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 11095425 - 11095474
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgaga 201  Q
    |||||||| |||||||||| | |||||||||||||||| | |||||||||    
T  11095425 gtttatttaagcttatctactgacataaacacttgtgatattgtttgaga 11095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 11615586 - 11615619
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgt 187  Q
    ||||||||||||||||| ||||||||||||||||    
T  11615586 ttatttgagcttatctactaacataaacacttgt 11615619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 19627568 - 19627620
Alignment:
Q  156 atttgagcttatctaataacataaacacttgtgacactgtttgagaaagctta 208  Q
    |||||| | |||||| ||| |||||||||||||| |||||||| |||||||||    
T  19627568 atttgaacctatctactaatataaacacttgtgatactgtttgtgaaagctta 19627620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 18628486 - 18628541
Alignment:
Q  155 tatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||||||||||| | |||||||||||||||| |||||||| || ||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatg 18628541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 46860056 - 46860000
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||| |||||||| | |||||| ||||||||| ||||||||||| ||||||||    
T  46860056 ttatttgaacttatctattcacataagcacttgtgaaactgtttgagagagcttatg 46860000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 47970441 - 47970377
Alignment:
Q  147 aatttgtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||| ||||||||||||||||||| | |||||| ||||||||| ||||||   ||||||||||||    
T  47970441 aattggtttatttgagcttatctactgacataagcacttgtgaaactgttatggaaagcttatgg 47970377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 9316663 - 9316606
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||| ||| | | |||||||||||||||| |||||||| || |||||||||    
T  9316663 ttatttgagctcatccatttacataaacacttgtgaaactgtttgggagagcttatgg 9316606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 1017166 - 1017122
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||| ||||| | |||||||||||||||| ||||||||    
T  1017166 ttatttgagctaatctactgacataaacacttgtgagactgtttg 1017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 4072016 - 4071960
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||| ||| ||| |||| ||||||||| ||||||||||| ||||||||    
T  4072016 ttatttgaggttaactattaatataagcacttgtgagactgtttgagagagcttatg 4071960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 11802673 - 11802633
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacact 193  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  11802673 tttatttgagcttttctaccaacataaacacttgtgacact 11802633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 2727818 - 2727859
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  2727818 tttgagcttatctaatcgcataaacacttgtgacactgtttg 2727859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 8420128 - 8420184
Alignment:
Q  153 tttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttat 209  Q
    |||||||||||||||||| | |||||||||||||||| |||||| | || |||||||    
T  8420128 tttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttat 8420184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 34429639 - 34429702
Alignment:
Q  147 aatttgtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||| ||||||||||||||||||| || |||||||||||| || | ||||||  ||||||||||    
T  34429639 aattggtttatttgagcttatctactagcataaacacttgagatattgtttggaaaagcttatg 34429702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 27857498 - 27857440
Alignment:
Q  152 gtttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||||| ||||||| | ||||| |||||||||| |||||||| || ||||||||    
T  27857498 gtttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatg 27857440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 30865621 - 30865564
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||||||||||  |||||||||||||||| | || |||| ||| |||||||||    
T  30865621 ttatttgagcttatctgttaacataaacacttgttagacagtttaagagagcttatgg 30865564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 35070399 - 35070443
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||||||| |||||||| ||||||||  ||||||||    
T  35070399 ttatttgagcttatctactaacataagcacttgtgggactgtttg 35070443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 6948 - 6892
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    ||||||||| ||||||| || ||||||||||||||| |||||||| || ||||||||    
T  6948 ttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatg 6892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 10199340 - 10199384
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttg 198  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  10199340 ttatttgagcttatctactaacataagcacttgtgacactatttg 10199384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 28467244 - 28467298
Alignment:
Q  157 tttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||||||||||| | ||| |||||||||||| |||||||| || |||||||||    
T  28467244 tttgagcttatctattgacacaaacacttgtgaaactgtttgggagagcttatgg 28467298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 33723314 - 33723371
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    |||||||| |||||||| || ||||||||||||||| |||| ||| |||| |||||||    
T  33723314 ttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatgg 33723371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 38867766 - 38867820
Alignment:
Q  155 tatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatgg 211  Q
    ||||||||  |||||||| |||||||||||||||  ||||||||||| |||||||||    
T  38867766 tatttgagtctatctaatgacataaacacttgtg--actgtttgagagagcttatgg 38867820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 34536296 - 34536240
Alignment:
Q  154 ttatttgagcttatctaataacataaacacttgtgacactgtttgagaaagcttatg 210  Q
    |||||||| | |||||| | |||||||||||||||| |||||||||||  |||||||    
T  34536296 ttatttgaacgtatctattgacataaacacttgtgagactgtttgagatggcttatg 34536240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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