View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_low_17 (Length: 288)
Name: NF13238_low_17
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 142 - 272
Target Start/End: Complemental strand, 13671908 - 13671778
Alignment:
| Q |
142 |
ctatgatgggagacatggcaggtcaaatcttacatggttgaaagaatctannnnnnnagaatggaaacaaacatatcatcttaccaaccatttttcacac |
241 |
Q |
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| T |
13671908 |
ctatgatgggagacgtggcaggtcaaatcttacatggttgaatgaatctacccccccagaatggaaacaaacatatcatcttaccaaccatttttcacac |
13671809 |
T |
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| Q |
242 |
catttaataaacatagcttgattttcaattt |
272 |
Q |
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| T |
13671808 |
catttaataaacatagcttgattttcaattt |
13671778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 13672033 - 13671949
Alignment:
| Q |
16 |
aatataatgcaggtaatatatggcataatatgaacatttaaaactcaatactttcaacaacgcaattattaattatgccaatttt |
100 |
Q |
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| T |
13672033 |
aatataatgcaggtaatatatagcataatatgaacatttaaaactcaatactttcaacaacgcaattattaattatgccaatttt |
13671949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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