View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_low_2 (Length: 615)
Name: NF13238_low_2
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 20 - 601
Target Start/End: Original strand, 34335617 - 34336199
Alignment:
| Q |
20 |
acatgcaagttgtatcttaatccgaatcaaaatcgaactcaacgaacacaaatgttatatgattggttttggagaaattacannnnnnn-aacttgaatt |
118 |
Q |
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| T |
34335617 |
acatgcaagttgtatcttaatccgaatcaaaatcgaactcaacgaacacaaatgttatatgattggttttggagaaattacattttttttaacttgaatt |
34335716 |
T |
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| Q |
119 |
tgagcaggtagtgatgatatttgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtatacaatctag |
218 |
Q |
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| T |
34335717 |
tgagcaggtagtgatgatatttgtgttgcaatggatcaatcagaaagatcctaccaacttatgggagaatatgctgcagggaagcgtgtatacgatctag |
34335816 |
T |
|
| Q |
219 |
aacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaatgctac |
318 |
Q |
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| T |
34335817 |
aacttggtcgtgatgcatcagtgtacattgtgttctgccctcaagggtctaatggtgccactgaagctccaagggcaaagcttccaaggcttaatgctac |
34335916 |
T |
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| Q |
319 |
ctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaaggattacat |
418 |
Q |
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| T |
34335917 |
ctcagaacatcttgtagcatatgaatacaagtaaatgcatgaatttattcttcacttctattagatattacaaaatgtataaaatcgtcaaggattacat |
34336016 |
T |
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| Q |
419 |
gccgggaagagtcttcttgatcaagcatcgcagaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctacnnnnnnn |
518 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336017 |
gccgggaagagtcttcttgatcaagcatcgcaaaatggaatcctgaagtagtagccaccatatactaaacttttgtgttttgtaatgatctacaaaaaaa |
34336116 |
T |
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| Q |
519 |
nttatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
601 |
Q |
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| T |
34336117 |
attatatttatcaggaggattaaacttcataaatccaaacattttccattgattttgcagatttagaccaataaaacacaggt |
34336199 |
T |
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