View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13238_low_22 (Length: 252)
Name: NF13238_low_22
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 751285 - 751046
Alignment:
| Q |
1 |
aattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751285 |
aattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatata |
751186 |
T |
|
| Q |
101 |
cttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnctttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
751185 |
cttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt-tttct |
751087 |
T |
|
| Q |
201 |
agttcttagaattagaagaatgctgcgtatatttgagtatt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751086 |
agttcttagaattagaagaatgctgcgtatatttgagtatt |
751046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 679481 - 679239
Alignment:
| Q |
1 |
aattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679481 |
aattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatata |
679382 |
T |
|
| Q |
101 |
cttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca--nnnnnnnnncttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
679381 |
cttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcatttttttttttcttt |
679282 |
T |
|
| Q |
199 |
ctagttcttagaattagaagaatgctgcgtatatttgagtatt |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
679281 |
ctagttctgagaattagaagaatgctgcgtatatttgagtatt |
679239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University