View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_low_29 (Length: 227)

Name: NF13238_low_29
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_low_29
NF13238_low_29
[»] chr8 (1 HSPs)
chr8 (1-200)||(41294449-41294648)
[»] chr3 (2 HSPs)
chr3 (59-200)||(7755507-7755648)
chr3 (84-200)||(4086182-4086298)
[»] chr5 (2 HSPs)
chr5 (59-157)||(26153224-26153320)
chr5 (2-39)||(10049317-10049354)
[»] chr2 (2 HSPs)
chr2 (79-160)||(2210353-2210435)
chr2 (2-41)||(29712445-29712484)
[»] chr4 (1 HSPs)
chr4 (59-200)||(43470872-43471012)
[»] chr1 (2 HSPs)
chr1 (2-55)||(19038977-19039030)
chr1 (3-55)||(32153052-32153104)
[»] chr7 (1 HSPs)
chr7 (8-55)||(28904860-28904907)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 41294648 - 41294449
Alignment:
Q  1 agttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttctaagaaaatgattgatgttacgagacacagtcttgcacgaattta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||    
T  41294648 agttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttttaggaaaatgcttgatgttacgagacacagtcttgcacgaattta 41294549  T
Q  101 tacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccatctgccaacacttctcag 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41294548 tacgaatagtaactattcattttattttcaaaacccaacaagctagattaaatttctataaagaatataggagtaactaccatctgccaacatttctcag 41294449  T

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Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 7755507 - 7755648
Alignment:
Q  59 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 158  Q
    ||||||| || |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7755507 gaaaatgcttaatgttacgagacacggtattgtacgaatttatacgaatagtaactattcattttatttttaaaacccaacaagctagattaaatttcta 7755606  T
Q  159 taaagaatataggagtaactaccatctgccaacacttctcag 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7755607 taaagtatataggagtaactaccatctgccaacacttctcag 7755648  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 4086182 - 4086298
Alignment:
Q  84 agtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccat 183  Q
    |||||||||  |||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||| || |||||| |||||    
T  4086182 agtcttgcataaatttagacgaatggtaattattcattttattttcaaaacccaacaagctagattaaatttctatagagtatacagcagtaaccaccat 4086281  T
Q  184 ctgccaacacttctcag 200  Q
    |||||||||||||||||    
T  4086282 ctgccaacacttctcag 4086298  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 26153224 - 26153320
Alignment:
Q  59 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttct 157  Q
    ||||||| || |||||||||  |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26153224 gaaaatgcttaatgttacga--cacaatcttgcacgaatttagacgaatggtaactattcattttattttcaaaatccaacaagctagattaaatttct 26153320  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 10049317 - 10049354
Alignment:
Q  2 gttttctgcagtgtgggaatctacaccattaaatttat 39  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  10049317 gttttttgcagtgtgggaatctacaccattaaatttat 10049354  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 2210435 - 2210353
Alignment:
Q  79 gacacagtcttgcacgaatttatacgaatag-taactattcattttattttcaaaatccaacaagctagattaaatttctata 160  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210435 gacatagtcttgcacgaatttagacgaatgggtaactattcattttattttcaaaatccaacaagctagattaaatttctata 2210353  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 29712445 - 29712484
Alignment:
Q  2 gttttctgcagtgtgggaatctacaccattaaatttatta 41  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  29712445 gttttctgtagtgtgggaatctacaccattaaatttatta 29712484  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 43471012 - 43470872
Alignment:
Q  59 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 158  Q
    ||||||| || |||||||||  || |||||||||| |||||| |||||| || |||||| |||||||||  ||||  || ||||||||||||||||||||    
T  43471012 gaaaatgcttaatgttacga--cagagtcttgcacaaatttagacgaatggtgactatttattttatttgtaaaacacagcaagctagattaaatttcta 43470915  T
Q  159 taaagaata-taggagtaactaccatctgccaacacttctcag 200  Q
    ||||| |||  || |||||| ||||||||||||||||||||||    
T  43470914 taaagtatacaagtagtaaccaccatctgccaacacttctcag 43470872  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 19038977 - 19039030
Alignment:
Q  2 gttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 55  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  19038977 gttttctgcggtgtgggaatctacaacattaaatttattatctctcataatttc 19039030  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 32153104 - 32153052
Alignment:
Q  3 ttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 55  Q
    ||||| ||| |||||||||||| ||||||||||| ||||| |||| |||||||    
T  32153104 ttttccgcaatgtgggaatctaaaccattaaattcattatctctcctaatttc 32153052  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 28904907 - 28904860
Alignment:
Q  8 tgcagtgtgggaatctacaccattaaatttattatatctcataatttc 55  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  28904907 tgcagtgtgggaatctacaccattaaatttattatctctcttaatttc 28904860  T

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