View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_low_3 (Length: 584)

Name: NF13238_low_3
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_low_3
NF13238_low_3
[»] chr5 (8 HSPs)
chr5 (11-566)||(14774579-14775131)
chr5 (1-404)||(15049410-15049820)
chr5 (1-404)||(15016637-15017047)
chr5 (7-149)||(17881877-17882019)
chr5 (423-566)||(17882359-17882502)
chr5 (225-314)||(17882054-17882143)
chr5 (492-563)||(15017127-15017198)
chr5 (488-566)||(15049896-15049974)
[»] chr1 (2 HSPs)
chr1 (1-166)||(36875041-36875206)
chr1 (327-410)||(36874810-36874893)
[»] chr4 (2 HSPs)
chr4 (34-153)||(53867379-53867498)
chr4 (109-175)||(43528020-43528086)


Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 11 - 566
Target Start/End: Original strand, 14774579 - 14775131
Alignment:
Q  11 agagacaaagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggatattca 110  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  14774579 agagacaaagataaaagacttgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcattcctttctacagcatccttgtatggatattca 14774678  T
Q  111 atccagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcctaattgacattcagactcgggaaa--catacatataaaaaatgtc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||   ||||    
T  14774679 atccagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcctaattgacattcagatttgggaaaggcatacatataaa---tgtc 14774775  T
Q  209 gtagcttgactttgtaaaaaacaatgaagaaaagtcacaagtatagaccacatccttaaagcatgtatgtacatttgaataattgcacgacataagaaag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14774776 gtagcttgactttgtaaaaaacaatgaagaaaagtcacaagtata--ccacatccttcaagcatgtatgtacatttgaataattgcacgacataagaaag 14774873  T
Q  309 attacaagcaatctatccacctttccggagcggtagaaaacaattcttcaatttcatggggccgcaacaacttatcctagaggaaggaaaatatatggtt 408  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  14774874 attacaagaaatctatctacctttccggagcggtggaaaacaattcttcaatttcatggggccgcagcaccttatcctagaggaaggaaaatatatggtt 14774973  T
Q  409 aaaagagataatacccaaaaataattgggaagcagcatgaaaatgtgaaaatagtcagggtcatttgcacaaataactcacaaaatcaccatcaagtcca 508  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14774974 aaaagagataatacccaaaaatgattgggaagcagcatgaaaatgtgaaattagtcagggtcatttgcacaaataactcacaaaatcaccatcaagtcca 14775073  T
Q  509 tcaaagattttctccaagaaacgaattgcttcatttgttaactcaacactctgcagac 566  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14775074 tcaaagattttctccaagaaacaaattgcttcatttgttaactcaacactctgcagac 14775131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 15049410 - 15049820
Alignment:
Q  1 aagagggactagagacaaagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgta 100  Q
    |||| |||||||| |||||||||| |||| ||||||||||||| ||||||||||| | ||||||| ||||||||  | ||||| ||||| ||||||||||    
T  15049410 aagaaggactagacacaaagataaaagacttgtgcacctctgataaaaatgcatctaatgatagttctccaaatatattccttcctacagcatccttgta 15049509  T
Q  101 tggatattcaatccagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcctaattgacattcagactcgggaaa--catacatat 198  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| | |||||||||||||||||||||||  |||||||||    
T  15049510 tggattttcaatccagggactgcaattaaaaatcataaaatatcaaataacattgctatgagttcaaattgacattcagactcgggaaaggcatacatat 15049609  T
Q  199 -aaaaaatgtcgtagcttgactttgtaaaaaacaatgaaga---aaagtcacaagtatagaccacatcctt---aaa---gcatgtatgtacatttgaat 288  Q
     |||||||||| ||||| ||||| |||||||||||||||||   ||||||||||||||| |||||||||||   |||   || | ||||| ||||||||     
T  15049610 aaaaaaatgtcatagctggacttcgtaaaaaacaatgaagaagcaaagtcacaagtatataccacatcctttggaaaattgc-tatatgtgcatttgaaa 15049708  T
Q  289 aattgcacgacataagaaagattacaagcaatctatccacctttccggagcggtagaaaacaattcttcaatttcatggggccgcaacaacttatcctag 388  Q
    |||||| | | ||| ||||| | |  ||||||||    ||||||||||||| |||||||||| |||||||| |||| ||||  ||| || |||||||| |    
T  15049709 aattgctcaatataggaaaggtcattagcaatct----acctttccggagcagtagaaaacagttcttcaagttcacggggttgcagcaccttatcctgg 15049804  T
Q  389 aggaaggaaaatatat 404  Q
    ||||||||||| ||||    
T  15049805 aggaaggaaaagatat 15049820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 15016637 - 15017047
Alignment:
Q  1 aagagggactagagacaaagataatagacatg-----tgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatcc 95  Q
    ||||||| ||||||||||||||||  ||| ||     ||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||| |||||    
T  15016637 aagagggcctagagacaaagataaatgacttgtgcactgcacctctgacaaaaatgcatcaagtgacaatcctccagatgcattcctttctacagcatcc 15016736  T
Q  96 ttgtatggatattcaatccagggactgcaattaaaagtcat-aaaatatcaaataacattgccaagagtcctaattgacattcagactcgggaaa--cat 192  Q
    |||||||||| ||||||||||||||||||||||||| |  | ||||||||||| | |||||||||||||||||||||||||||||||||||||||  |||    
T  15016737 ttgtatggattttcaatccagggactgcaattaaaaattttaaaaatatcaaaaagcattgccaagagtcctaattgacattcagactcgggaaaggcat 15016836  T
Q  193 acatataaaaaatgtcgtagct-tgactttgtaaaaaacaatgaaga---aaagtcacaagtatagaccacatccttaaagcatgtatgtacatttgaat 288  Q
     | ||||||| ||| | |||||  ||||||||  |||||| ||||||   |||||||  |||||| ||||||||||||||   || |||||||||||||     
T  15016837 gcctataaaagatgccatagctgggactttgt-taaaacagtgaagaagcaaagtcagcagtataaaccacatccttaaaaattgaatgtacatttgaaa 15016935  T
Q  289 aattgcacgacataagaaagattacaagcaatctatccacctttccggagcggtagaaaacaattcttcaatttcatggggccgcaacaacttatcctag 388  Q
    |||| ||| |||||||||||||||||| ||| ||    ||||||  || ||  ||||||||| |||||||| |||||||||  ||| || |||||||| |    
T  15016936 aattccacaacataagaaagattacaatcaacct----acctttttggggcactagaaaacagttcttcaagttcatggggttgcagcaccttatcctgg 15017031  T
Q  389 aggaaggaaaatatat 404  Q
    ||||||||||| ||||    
T  15017032 aggaaggaaaagatat 15017047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 17881877 - 17882019
Alignment:
Q  7 gactagagacaaagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggata 106  Q
    |||||||||||||||||| |||| | | ||||||||||||||| ||||| ||||||||||||||| ||||  | |||| |||| ||||||  ||||||||    
T  17881877 gactagagacaaagataaaagacttattcacctctgacaaaaacgcatcgagtgatagtcctccacatgctttactttttacagcatcctcatatggata 17881976  T
Q  107 ttcaatccagggactgcaattaaaagtcataaaatatcaaata 149  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  17881977 ttcaatccagggactgcaattaaaaatcataaaatatcaaata 17882019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 566
Target Start/End: Original strand, 17882359 - 17882502
Alignment:
Q  423 ccaaaaataattgggaagcagcatgaaaatgtgaaaatagtcagggtcatttgcacaaataactcacaaaatcaccatcaagtccatcaaagattttctc 522  Q
    |||||||| |||||| ||||||||||||| |||||| || ||||||||||| ||||| || ||  ||||||||||  |||||| ||||||| | | |||     
T  17882359 ccaaaaatgattggggagcagcatgaaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatcaaaaactgtctt 17882458  T
Q  523 caagaaacgaattgcttcatttgttaactcaacactctgcagac 566  Q
    |||||||  |||||||||||||||||| ||||||||||||||||    
T  17882459 caagaaatcaattgcttcatttgttaattcaacactctgcagac 17882502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 17882054 - 17882143
Alignment:
Q  225 aaaaacaatgaagaaaagtcacaagtatagaccacatccttaaagcatgtatgtacatttgaataattgcacgacataagaaagattaca 314  Q
    |||||||| |||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||  |||| |||||||||||    
T  17882054 aaaaacaaagaagcaaagtcaaaagtatataccacatccttaaagcatgtgtgtacatttgaaaaattgcacagcatatgaaagattaca 17882143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 563
Target Start/End: Original strand, 15017127 - 15017198
Alignment:
Q  492 aatcaccatcaagtccatcaaagattttctccaagaaacgaattgcttcatttgttaactcaacactctgca 563  Q
    |||| ||||||| | ||||||||||| |||||||||||  || |||||||||||| || |||||||||||||    
T  15017127 aatcgccatcaaattcatcaaagattgtctccaagaaatcaactgcttcatttgtcaattcaacactctgca 15017198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 566
Target Start/End: Original strand, 15049896 - 15049974
Alignment:
Q  488 acaaaatcaccatcaagtccatcaaagattttctccaagaaacgaattgcttcatttgttaactcaacactctgcagac 566  Q
    |||||||||||||||| | ||||||| ||| |||||||||||  |||||||||||  || || ||||||||||| ||||    
T  15049896 acaaaatcaccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagac 15049974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 36875206 - 36875041
Alignment:
Q  1 aagagggactagagacaaagataatagacatgtgcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgta 100  Q
    ||||||||||||||||||| |||  |||  |||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||  ||    
T  36875206 aagagggactagagacaaaaatagaagatgtgtgcacctcagacaaaaatgcatcaagtgatagtcctccaaatgcatttctttcaacagcatcctcata 36875107  T
Q  101 tggatattcaatccagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcct 166  Q
    | ||| | | ||||||||||| ||||| ||| |  ||||||||||||||||||||||||| |||||    
T  36875106 tagatttccgatccagggactacaatttaaaattgtaaaatatcaaataacattgccaagggtcct 36875041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 410
Target Start/End: Complemental strand, 36874893 - 36874810
Alignment:
Q  327 acctttccggagcggtagaaaacaattcttcaatttcatggggccgcaacaacttatcctagaggaaggaaaatatatggttaa 410  Q
    |||||||||| || || |||||||||||||||| |||| |||| ||||||| |  |||||||| |||||||||||| |||||||    
T  36874893 acctttccggggcagtggaaaacaattcttcaagttcacggggacgcaacatcccatcctagatgaaggaaaatatgtggttaa 36874810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 53867498 - 53867379
Alignment:
Q  34 gcacctctgacaaaaatgcatcaagtgatagtcctccaaatgcagtcctttctacaacatccttgtatggatattcaatccagggactgcaattaaaagt 133  Q
    |||||| ||||||||||||||||||||||||||||| ||||||  ||   ||| || |||||| ||| |||  | | ||||| |||||| |||||| |||    
T  53867498 gcacctttgacaaaaatgcatcaagtgatagtcctctaaatgcgctctcatctgcagcatcctcgtagggagctccgatccaaggactgaaattaacagt 53867399  T
Q  134 cataaaatatcaaataacat 153  Q
    |||||||||| |||||||||    
T  53867398 cataaaatattaaataacat 53867379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 43528086 - 43528020
Alignment:
Q  109 caatccagggactgcaattaaaagtcataaaatatcaaataacattgccaagagtcctaattgacat 175  Q
    ||||||| |||| | |||||||| || |||||||||||||| ||||| |||||||||| ||||||||    
T  43528086 caatccaaggacggaaattaaaaatcctaaaatatcaaatatcattggcaagagtcctcattgacat 43528020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University