View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13238_low_4 (Length: 569)
Name: NF13238_low_4
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13238_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 145 - 550
Target Start/End: Complemental strand, 7652006 - 7651613
Alignment:
| Q |
145 |
ctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgaggccccttaagatct |
244 |
Q |
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| T |
7652006 |
ctctttaggcaaattgaccttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgagtccccttaagatct |
7651907 |
T |
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| Q |
245 |
tcaagtcctttcatctgctgaagttgttgcaactgttgttgaagctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttat |
344 |
Q |
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| T |
7651906 |
tcaagtcctttcatctgctgaagttgttg------------aagctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttat |
7651819 |
T |
|
| Q |
345 |
ttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttgaatgttcttcatctggtttgccatgttgttatggtt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651818 |
ttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttgaatgttcttcatctggtttgccatgttgttatggtt |
7651719 |
T |
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| Q |
445 |
gttattgttgttgttctccgttggagcacaccaaagttctgcatgtttctttgattttgcaagcttcttaatgagaacatctgggtctatattcccagca |
544 |
Q |
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| T |
7651718 |
gttattgttgttgttctccgttggagcacaccaaagttctgcatgtttctttgattttgcaagcttcttgatgagaacatctgggtctatattcccagca |
7651619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 145 - 531
Target Start/End: Complemental strand, 7657407 - 7657009
Alignment:
| Q |
145 |
ctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgaggccccttaagatct |
244 |
Q |
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| T |
7657407 |
ctcttcaggcaaattgaacttaacacctttcatatttgtattttgatttggtggtggcattttcatgttcatgtccttgaattgaggcaccttcagatct |
7657308 |
T |
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| Q |
245 |
tcaagtcctttcatctgctgaagttgttgcaactgttgt---------tgaagctg---ttgttgaggattctgctcttgttgtccacctccctttggtt |
332 |
Q |
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| T |
7657307 |
ccaaatcctttaatatgttgaagttgttgcagctgttgtaactgttgctgaagctgctgttgttgaggattttgtccttgttggctaccaccctttggct |
7657208 |
T |
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| Q |
333 |
ggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttgaatgttcttcatctggtttgccat |
432 |
Q |
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| T |
7657207 |
gattttggttatttccaggacccttttgccccttgttgttattgtttcctccaccaccttttccattgtcaatatgcatgttcttcatttgatttggaat |
7657108 |
T |
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| Q |
433 |
gttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctgcatgtttctttgattttgcaagcttcttaatgagaacatctgggtc |
531 |
Q |
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| T |
7657107 |
gttgttctggttgttattgttgttgtttgcctttggagcaccccaaagttctgcatgtttccctgattttgcaagcttcttgatgagaacatttgggtc |
7657009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 7652141 - 7652075
Alignment:
| Q |
13 |
catcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaaggattctctatt |
79 |
Q |
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| T |
7652141 |
catcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaagtattctctatt |
7652075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 7657548 - 7657490
Alignment:
| Q |
13 |
catcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaaggat |
71 |
Q |
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| T |
7657548 |
catcatcatgtgagcaggaccattaccccccataggtagtttcatcttattcaaaggat |
7657490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 48539049 - 48539089
Alignment:
| Q |
251 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
291 |
Q |
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| T |
48539049 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48539089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 48573304 - 48573344
Alignment:
| Q |
251 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
291 |
Q |
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| T |
48573304 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48573344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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