View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_low_5 (Length: 542)

Name: NF13238_low_5
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_low_5
NF13238_low_5
[»] chr7 (2 HSPs)
chr7 (15-525)||(7237348-7237854)
chr7 (448-483)||(23113974-23114009)
[»] scaffold0097 (1 HSPs)
scaffold0097 (335-525)||(21261-21444)
[»] chr8 (3 HSPs)
chr8 (335-525)||(22535809-22535992)
chr8 (335-525)||(22531124-22531307)
chr8 (335-525)||(25993733-25993913)
[»] chr6 (1 HSPs)
chr6 (335-525)||(33091257-33091440)
[»] chr5 (1 HSPs)
chr5 (335-525)||(13191555-13191738)
[»] chr3 (2 HSPs)
chr3 (335-525)||(49368203-49368386)
chr3 (335-525)||(20983349-20983532)
[»] chr2 (1 HSPs)
chr2 (335-525)||(20717424-20717607)
[»] chr1 (2 HSPs)
chr1 (368-525)||(30190674-30190825)
chr1 (390-525)||(31991514-31991649)


Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Original strand, 7237348 - 7237854
Alignment:
Q  15 taatactagatttagtttgttatgcagttgtgccagcatagaataaatccttatgatgcggccaaattagttaagcaacatttcttttatttccattact 114  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  7237348 taatactagatttagtttgttatgcagagttgccagcatagaataaatccttatgatgcggccaatttagttaagcaacatttcttttatttccattaat 7237447  T
Q  115 atataagcagatgtattcatttgaaagtatcatgaataaaatatcaattctattccttcatcctatattctttaggaggtactcagtcctcaaactctga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7237448 atataagcagatgtattcatttgaaagtatcatgaataaaatatcaattatattccttcatcctatattctttaggaggtactcagtcctcaaactctga 7237547  T
Q  215 gaattacccatttaatatttgttctgagaattatcccacttgaacatgataatttttattttcctctacttcccacattaatttatacgtgggattagta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  7237548 gaattacccatttaatatttgttctgagaattatcccacttgaacatgataatttttattttcctctacttcccacattaatttatacgtgggtttaata 7237647  T
Q  315 tacttgcaggtataatcatatagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaa 414  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  7237648 tacttgcaggtataatcatttagaaatgagaagacagaagaagaaggaagagcagtcaacagtacagagaagatgaaagtgaaatgagcagtcagtaaaa 7237747  T
Q  415 atagagaaaagaacgtgttgaaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttatt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  7237748 atagagaaaagaacgtgttgaaaattatgatcaagtagaggaagaggcaaataaaatgagggtaga----atagtaaaatttaaagacacaagttttatt 7237843  T
Q  515 ccattgcatac 525  Q
    |||||| ||||    
T  7237844 ccattggatac 7237854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 483
Target Start/End: Complemental strand, 23114009 - 23113974
Alignment:
Q  448 agtagaggaagaggcaaataaaatgagggtagaata 483  Q
    ||||||||||||||||||||||||||||||||||||    
T  23114009 agtagaggaagaggcaaataaaatgagggtagaata 23113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 21261 - 21444
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  21261 tagaaatgagaagacaggagaagaag-aagagcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 21357  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  21358 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 21444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 22535809 - 22535992
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  22535809 tagaaatgagaagacaggagaagaag-aagagcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 22535905  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  22535906 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 22535992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 22531124 - 22531307
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| || |||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||     
T  22531124 tagaaatgagaagacaggagaagaagaaa-agcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttt 22531220  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  22531221 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 22531307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 25993733 - 25993913
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  ||||||||    |||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  25993733 tagaaatgagaagacaggagaagaag----agcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 25993826  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  25993827 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 25993913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 335 - 525
Target Start/End: Complemental strand, 33091440 - 33091257
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  33091440 tagaaatgagaagacaggagaagaag-aagagcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 33091344  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  33091343 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 33091257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 13191555 - 13191738
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  13191555 tagaaatgagaagacaggagaagaag-aagagcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 13191651  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  13191652 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 13191738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 49368203 - 49368386
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  49368203 tagaaatgagaagacaggagaagaag-aagagcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 49368299  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  49368300 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 49368386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 335 - 525
Target Start/End: Complemental strand, 20983532 - 20983349
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20983532 tagaaatgagaagacaggagaagaag-aagagcagtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 20983436  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||| ||||| ||||    
T  20983435 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcatttcattggatac 20983349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 20717424 - 20717607
Alignment:
Q  335 tagaaatgagaagacataagaagaaggaagagcagtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttg 434  Q
    ||||||||||||||||  |||||||| |||||||||||  |||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20717424 tagaaatgagaagacaggagaagaag-aagagcagtcagtagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttg 20717520  T
Q  435 aaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| ||||  ||||||||||||||||||||||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  20717521 aaaattgtgattgagtagaggaagaggcaaataaaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 20717607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 368 - 525
Target Start/End: Original strand, 30190674 - 30190825
Alignment:
Q  368 agtcaacagtacatagaagatgaaagtgaaatgagcagtcagtagaaatagagaaaagaacgtgttgaaaattatgatcaagtagaggaagaggcaaata 467  Q
    ||||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  30190674 agtcagcagtacaaagaagatgaaagtgaaatg--cagtcagtagaaatagagaaaagaacgtgttgaaaattgtgattgagtagaggaagaggcaaata 30190771  T
Q  468 aaatgagggtagaatatatagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    ||| |||||||||    |||||||||||| ||||||||| ||| ||||||||| ||||    
T  30190772 aaaggagggtaga----atagtaaaatttcaagacacaaatttcattccattggatac 30190825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 525
Target Start/End: Original strand, 31991514 - 31991649
Alignment:
Q  390 aaagtgaaatgagcagtcagtagaaa----tagagaaaagaacgtgttgaaaattatgatcaagtagaggaagaggcaaataaaatgagggtagaatata 485  Q
    ||||||| ||||||||||||||| ||    | |||||||| |||||| | |||||||  |  ||||||||||||| |||||||||||||||||||    |    
T  31991514 aaagtgagatgagcagtcagtaggaagtaatggagaaaaggacgtgtgggaaattatatttgagtagaggaagagacaaataaaatgagggtaga----a 31991609  T
Q  486 tagtaaaatttaaagacacaagttttattccattgcatac 525  Q
    |||||| |||| ||||||||||||  ||||||||| ||||    
T  31991610 tagtaatatttcaagacacaagttccattccattggatac 31991649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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